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Class: MolecularActivityToPathwayAssociation

Association that holds the relationship between a reaction and the pathway it participates in.

URI: biolink:MolecularActivityToPathwayAssociation

classDiagram class MolecularActivityToPathwayAssociation Association <|-- MolecularActivityToPathwayAssociation MolecularActivityToPathwayAssociation : aggregator_knowledge_source MolecularActivityToPathwayAssociation : category MolecularActivityToPathwayAssociation : description MolecularActivityToPathwayAssociation : has_attribute MolecularActivityToPathwayAssociation --|> attribute : has_attribute MolecularActivityToPathwayAssociation : has_evidence MolecularActivityToPathwayAssociation --|> evidence type : has_evidence MolecularActivityToPathwayAssociation : id MolecularActivityToPathwayAssociation : iri MolecularActivityToPathwayAssociation : knowledge_source MolecularActivityToPathwayAssociation : name MolecularActivityToPathwayAssociation : negated MolecularActivityToPathwayAssociation : object MolecularActivityToPathwayAssociation --|> pathway : object MolecularActivityToPathwayAssociation : object_category MolecularActivityToPathwayAssociation --|> ontology class : object_category MolecularActivityToPathwayAssociation : object_category_closure MolecularActivityToPathwayAssociation --|> ontology class : object_category_closure MolecularActivityToPathwayAssociation : object_closure MolecularActivityToPathwayAssociation : object_label_closure MolecularActivityToPathwayAssociation : object_namespace MolecularActivityToPathwayAssociation : original_object MolecularActivityToPathwayAssociation : original_predicate MolecularActivityToPathwayAssociation : original_subject MolecularActivityToPathwayAssociation : predicate MolecularActivityToPathwayAssociation : primary_knowledge_source MolecularActivityToPathwayAssociation : publications MolecularActivityToPathwayAssociation --|> publication : publications MolecularActivityToPathwayAssociation : qualifiers MolecularActivityToPathwayAssociation --|> ontology class : qualifiers MolecularActivityToPathwayAssociation : retrieval_source_ids MolecularActivityToPathwayAssociation --|> retrieval source : retrieval_source_ids MolecularActivityToPathwayAssociation : subject MolecularActivityToPathwayAssociation --|> molecular activity : subject MolecularActivityToPathwayAssociation : subject_category MolecularActivityToPathwayAssociation --|> ontology class : subject_category MolecularActivityToPathwayAssociation : subject_category_closure MolecularActivityToPathwayAssociation --|> ontology class : subject_category_closure MolecularActivityToPathwayAssociation : subject_closure MolecularActivityToPathwayAssociation : subject_label_closure MolecularActivityToPathwayAssociation : subject_namespace MolecularActivityToPathwayAssociation : timepoint MolecularActivityToPathwayAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
MolecularActivity		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
Pathway		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:MolecularActivityToPathwayAssociation
native biolink:MolecularActivityToPathwayAssociation

LinkML Source

Direct

name: molecular activity to pathway association
description: Association that holds the relationship between a reaction and the pathway
  it participates in.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: molecular activity
  object:
    name: object
    domain_of:
    - association
    range: pathway
  predicate:
    name: predicate
    domain_of:
    - predicate mapping
    - association
    subproperty_of: part of