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Class: NucleicAcidSequenceMotif

A linear nucleotide sequence pattern that is widespread and has, or is conjectured to have, a biological significance. e.g. the TATA box promoter motif, transcription factor binding consensus sequences.

URI: biolink:NucleicAcidSequenceMotif

classDiagram class NucleicAcidSequenceMotif BiologicalEntity <|-- NucleicAcidSequenceMotif NucleicAcidSequenceMotif : category NucleicAcidSequenceMotif : description NucleicAcidSequenceMotif : full_name NucleicAcidSequenceMotif : has_attribute NucleicAcidSequenceMotif --|> attribute : has_attribute NucleicAcidSequenceMotif : id NucleicAcidSequenceMotif : in_taxon NucleicAcidSequenceMotif --|> organism taxon : in_taxon NucleicAcidSequenceMotif : in_taxon_label NucleicAcidSequenceMotif : iri NucleicAcidSequenceMotif : name NucleicAcidSequenceMotif : provided_by NucleicAcidSequenceMotif : synonym NucleicAcidSequenceMotif : type NucleicAcidSequenceMotif : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • consensus sequence

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:NucleicAcidSequenceMotif
native biolink:NucleicAcidSequenceMotif

LinkML Source

Direct

name: nucleic acid sequence motif
description: A linear nucleotide sequence pattern that is widespread and has, or is
  conjectured to have, a biological significance. e.g. the TATA box promoter motif,
  transcription factor binding consensus sequences.
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- consensus sequence
is_a: biological entity