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Class: NucleosomeModification

A chemical modification of a histone protein within a nucleosome octomer or a substitution of a histone with a variant histone isoform. e.g. Histone 4 Lysine 20 methylation (H4K20me), histone variant H2AZ substituting H2A.

URI: biolink:NucleosomeModification

classDiagram class NucleosomeModification GeneProductIsoformMixin <|-- NucleosomeModification GenomicEntity <|-- NucleosomeModification EpigenomicEntity <|-- NucleosomeModification BiologicalEntity <|-- NucleosomeModification NucleosomeModification : category NucleosomeModification : description NucleosomeModification : full_name NucleosomeModification : has_attribute NucleosomeModification --|> attribute : has_attribute NucleosomeModification : has_biological_sequence NucleosomeModification : id NucleosomeModification : in_taxon NucleosomeModification --|> organism taxon : in_taxon NucleosomeModification : in_taxon_label NucleosomeModification : iri NucleosomeModification : name NucleosomeModification : provided_by NucleosomeModification : synonym NucleosomeModification : type NucleosomeModification : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity, EpigenomicEntity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... GeneProductMixin, NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing GeneProductMixin, NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
SymbolType		 genes are typically designated by a short symbol and a full name Entity, MacromolecularMachineMixin
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:NucleosomeModification
native biolink:NucleosomeModification

LinkML Source

Direct

name: nucleosome modification
description: A chemical modification of a histone protein within a nucleosome octomer
  or a substitution of a histone with a variant histone isoform. e.g. Histone 4 Lysine
  20 methylation (H4K20me), histone variant H2AZ substituting H2A.
from_schema: https://w3id.org/biolink/biolink-model
is_a: biological entity
mixins:
- gene product isoform mixin
- genomic entity
- epigenomic entity