Class: OrganismTaxon
A classification of a set of organisms. Example instances: NCBITaxon:9606 (Homo sapiens), NCBITaxon:2 (Bacteria). Can also be used to represent strains or subspecies.
classDiagram
class OrganismTaxon
NamedThing <|-- OrganismTaxon
OrganismTaxon : category
OrganismTaxon : description
OrganismTaxon : full_name
OrganismTaxon : has_attribute
OrganismTaxon --|> attribute : has_attribute
OrganismTaxon : id
OrganismTaxon : iri
OrganismTaxon : name
OrganismTaxon : provided_by
OrganismTaxon : synonym
OrganismTaxon : type
OrganismTaxon : xref
Inheritance
- Entity
- NamedThing
- OrganismTaxon
- NamedThing
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| provided_by | 0..* String |
The value in this node property represents the knowledge provider that create... | NamedThing |
| xref | 0..* Uriorcurie |
A database cross reference or alternative identifier for a NamedThing or edge... | NamedThing |
| full_name | 0..1 LabelType |
a long-form human readable name for a thing | NamedThing |
| synonym | 0..* LabelType |
Alternate human-readable names for a thing | NamedThing |
| id | 1..1 String |
A unique identifier for an entity | Entity |
| iri | 0..1 IriType |
An IRI for an entity | Entity |
| category | 1..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
| type | 0..* String |
Entity | |
| name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
| description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
| has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Usages
Aliases
- taxon
- taxonomic classification
Identifier and Mapping Information
Valid ID Prefixes
Instances of this class should have identifiers with one of the following prefixes:
-
NCBITaxon
-
MESH
-
UMLS
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | biolink:OrganismTaxon |
| native | biolink:OrganismTaxon |
| exact | WIKIDATA:Q16521, STY:T001, bioschemas:Taxon |
| narrow | dcid:BiologicalSpecies |
LinkML Source
Direct
name: organism taxon
id_prefixes:
- NCBITaxon
- MESH
- UMLS
description: 'A classification of a set of organisms. Example instances: NCBITaxon:9606
(Homo sapiens), NCBITaxon:2 (Bacteria). Can also be used to represent strains or
subspecies.'
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- taxon
- taxonomic classification
exact_mappings:
- WIKIDATA:Q16521
- STY:T001
- bioschemas:Taxon
narrow_mappings:
- dcid:BiologicalSpecies
is_a: named thing
values_from:
- NCBITaxon
slot_usage:
has taxonomic rank:
name: has taxonomic rank
mappings:
- WIKIDATA:P105
multivalued: false
range: taxonomic rank