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Class: OrganismTaxonToEnvironmentAssociation

  • NOTE: this is an abstract class and should not be instantiated directly

URI: biolink:OrganismTaxonToEnvironmentAssociation

classDiagram class OrganismTaxonToEnvironmentAssociation OrganismTaxonToEntityAssociation <|-- OrganismTaxonToEnvironmentAssociation Association <|-- OrganismTaxonToEnvironmentAssociation OrganismTaxonToEnvironmentAssociation : aggregator_knowledge_source OrganismTaxonToEnvironmentAssociation : category OrganismTaxonToEnvironmentAssociation : description OrganismTaxonToEnvironmentAssociation : has_attribute OrganismTaxonToEnvironmentAssociation --|> attribute : has_attribute OrganismTaxonToEnvironmentAssociation : has_evidence OrganismTaxonToEnvironmentAssociation --|> evidence type : has_evidence OrganismTaxonToEnvironmentAssociation : id OrganismTaxonToEnvironmentAssociation : iri OrganismTaxonToEnvironmentAssociation : knowledge_source OrganismTaxonToEnvironmentAssociation : name OrganismTaxonToEnvironmentAssociation : negated OrganismTaxonToEnvironmentAssociation : object OrganismTaxonToEnvironmentAssociation --|> named thing : object OrganismTaxonToEnvironmentAssociation : object_category OrganismTaxonToEnvironmentAssociation --|> ontology class : object_category OrganismTaxonToEnvironmentAssociation : object_category_closure OrganismTaxonToEnvironmentAssociation --|> ontology class : object_category_closure OrganismTaxonToEnvironmentAssociation : object_closure OrganismTaxonToEnvironmentAssociation : object_label_closure OrganismTaxonToEnvironmentAssociation : object_namespace OrganismTaxonToEnvironmentAssociation : original_object OrganismTaxonToEnvironmentAssociation : original_predicate OrganismTaxonToEnvironmentAssociation : original_subject OrganismTaxonToEnvironmentAssociation : predicate OrganismTaxonToEnvironmentAssociation : primary_knowledge_source OrganismTaxonToEnvironmentAssociation : publications OrganismTaxonToEnvironmentAssociation --|> publication : publications OrganismTaxonToEnvironmentAssociation : qualifiers OrganismTaxonToEnvironmentAssociation --|> ontology class : qualifiers OrganismTaxonToEnvironmentAssociation : retrieval_source_ids OrganismTaxonToEnvironmentAssociation --|> retrieval source : retrieval_source_ids OrganismTaxonToEnvironmentAssociation : subject OrganismTaxonToEnvironmentAssociation --|> organism taxon : subject OrganismTaxonToEnvironmentAssociation : subject_category OrganismTaxonToEnvironmentAssociation --|> ontology class : subject_category OrganismTaxonToEnvironmentAssociation : subject_category_closure OrganismTaxonToEnvironmentAssociation --|> ontology class : subject_category_closure OrganismTaxonToEnvironmentAssociation : subject_closure OrganismTaxonToEnvironmentAssociation : subject_label_closure OrganismTaxonToEnvironmentAssociation : subject_namespace OrganismTaxonToEnvironmentAssociation : timepoint OrganismTaxonToEnvironmentAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
OrganismTaxon		 the taxon that is the subject of the association Association
predicate 1..1
PredicateType		 predicate describing the relationship between the taxon and the environment Association
object 1..1
NamedThing		 the environment in which the organism occurs Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:OrganismTaxonToEnvironmentAssociation
native biolink:OrganismTaxonToEnvironmentAssociation

LinkML Source

Direct

name: organism taxon to environment association
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
abstract: true
mixins:
- organism taxon to entity association
slot_usage:
  subject:
    name: subject
    description: the taxon that is the subject of the association
    domain_of:
    - association
    role: interactor taxon
    range: organism taxon
  object:
    name: object
    description: the environment in which the organism occurs
    domain_of:
    - association
    role: environmental context
  predicate:
    name: predicate
    description: predicate describing the relationship between the taxon and the environment
    domain_of:
    - predicate mapping
    - association