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Class: OrganismTaxonToOrganismTaxonAssociation

A relationship between two organism taxon nodes

  • NOTE: this is an abstract class and should not be instantiated directly

URI: biolink:OrganismTaxonToOrganismTaxonAssociation

classDiagram class OrganismTaxonToOrganismTaxonAssociation OrganismTaxonToEntityAssociation <|-- OrganismTaxonToOrganismTaxonAssociation Association <|-- OrganismTaxonToOrganismTaxonAssociation OrganismTaxonToOrganismTaxonAssociation <|-- OrganismTaxonToOrganismTaxonSpecialization OrganismTaxonToOrganismTaxonAssociation <|-- OrganismTaxonToOrganismTaxonInteraction OrganismTaxonToOrganismTaxonAssociation : aggregator_knowledge_source OrganismTaxonToOrganismTaxonAssociation : category OrganismTaxonToOrganismTaxonAssociation : description OrganismTaxonToOrganismTaxonAssociation : has_attribute OrganismTaxonToOrganismTaxonAssociation --|> attribute : has_attribute OrganismTaxonToOrganismTaxonAssociation : has_evidence OrganismTaxonToOrganismTaxonAssociation --|> evidence type : has_evidence OrganismTaxonToOrganismTaxonAssociation : id OrganismTaxonToOrganismTaxonAssociation : iri OrganismTaxonToOrganismTaxonAssociation : knowledge_source OrganismTaxonToOrganismTaxonAssociation : name OrganismTaxonToOrganismTaxonAssociation : negated OrganismTaxonToOrganismTaxonAssociation : object OrganismTaxonToOrganismTaxonAssociation --|> organism taxon : object OrganismTaxonToOrganismTaxonAssociation : object_category OrganismTaxonToOrganismTaxonAssociation --|> ontology class : object_category OrganismTaxonToOrganismTaxonAssociation : object_category_closure OrganismTaxonToOrganismTaxonAssociation --|> ontology class : object_category_closure OrganismTaxonToOrganismTaxonAssociation : object_closure OrganismTaxonToOrganismTaxonAssociation : object_label_closure OrganismTaxonToOrganismTaxonAssociation : object_namespace OrganismTaxonToOrganismTaxonAssociation : original_object OrganismTaxonToOrganismTaxonAssociation : original_predicate OrganismTaxonToOrganismTaxonAssociation : original_subject OrganismTaxonToOrganismTaxonAssociation : predicate OrganismTaxonToOrganismTaxonAssociation : primary_knowledge_source OrganismTaxonToOrganismTaxonAssociation : publications OrganismTaxonToOrganismTaxonAssociation --|> publication : publications OrganismTaxonToOrganismTaxonAssociation : qualifiers OrganismTaxonToOrganismTaxonAssociation --|> ontology class : qualifiers OrganismTaxonToOrganismTaxonAssociation : retrieval_source_ids OrganismTaxonToOrganismTaxonAssociation --|> retrieval source : retrieval_source_ids OrganismTaxonToOrganismTaxonAssociation : subject OrganismTaxonToOrganismTaxonAssociation --|> organism taxon : subject OrganismTaxonToOrganismTaxonAssociation : subject_category OrganismTaxonToOrganismTaxonAssociation --|> ontology class : subject_category OrganismTaxonToOrganismTaxonAssociation : subject_category_closure OrganismTaxonToOrganismTaxonAssociation --|> ontology class : subject_category_closure OrganismTaxonToOrganismTaxonAssociation : subject_closure OrganismTaxonToOrganismTaxonAssociation : subject_label_closure OrganismTaxonToOrganismTaxonAssociation : subject_namespace OrganismTaxonToOrganismTaxonAssociation : timepoint OrganismTaxonToOrganismTaxonAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
OrganismTaxon		 organism taxon that is the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
OrganismTaxon		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:OrganismTaxonToOrganismTaxonAssociation
native biolink:OrganismTaxonToOrganismTaxonAssociation

LinkML Source

Direct

name: organism taxon to organism taxon association
description: A relationship between two organism taxon nodes
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
abstract: true
mixins:
- organism taxon to entity association
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: organism taxon
  object:
    name: object
    domain_of:
    - association
    range: organism taxon
defining_slots:
- subject
- object