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Class: OrganismTaxonToOrganismTaxonSpecialization

A child-parent relationship between two taxa. For example: Homo sapiens subclass_of Homo

URI: biolink:OrganismTaxonToOrganismTaxonSpecialization

classDiagram class OrganismTaxonToOrganismTaxonSpecialization OrganismTaxonToOrganismTaxonAssociation <|-- OrganismTaxonToOrganismTaxonSpecialization OrganismTaxonToOrganismTaxonSpecialization : aggregator_knowledge_source OrganismTaxonToOrganismTaxonSpecialization : category OrganismTaxonToOrganismTaxonSpecialization : description OrganismTaxonToOrganismTaxonSpecialization : has_attribute OrganismTaxonToOrganismTaxonSpecialization --|> attribute : has_attribute OrganismTaxonToOrganismTaxonSpecialization : has_evidence OrganismTaxonToOrganismTaxonSpecialization --|> evidence type : has_evidence OrganismTaxonToOrganismTaxonSpecialization : id OrganismTaxonToOrganismTaxonSpecialization : iri OrganismTaxonToOrganismTaxonSpecialization : knowledge_source OrganismTaxonToOrganismTaxonSpecialization : name OrganismTaxonToOrganismTaxonSpecialization : negated OrganismTaxonToOrganismTaxonSpecialization : object OrganismTaxonToOrganismTaxonSpecialization --|> organism taxon : object OrganismTaxonToOrganismTaxonSpecialization : object_category OrganismTaxonToOrganismTaxonSpecialization --|> ontology class : object_category OrganismTaxonToOrganismTaxonSpecialization : object_category_closure OrganismTaxonToOrganismTaxonSpecialization --|> ontology class : object_category_closure OrganismTaxonToOrganismTaxonSpecialization : object_closure OrganismTaxonToOrganismTaxonSpecialization : object_label_closure OrganismTaxonToOrganismTaxonSpecialization : object_namespace OrganismTaxonToOrganismTaxonSpecialization : original_object OrganismTaxonToOrganismTaxonSpecialization : original_predicate OrganismTaxonToOrganismTaxonSpecialization : original_subject OrganismTaxonToOrganismTaxonSpecialization : predicate OrganismTaxonToOrganismTaxonSpecialization : primary_knowledge_source OrganismTaxonToOrganismTaxonSpecialization : publications OrganismTaxonToOrganismTaxonSpecialization --|> publication : publications OrganismTaxonToOrganismTaxonSpecialization : qualifiers OrganismTaxonToOrganismTaxonSpecialization --|> ontology class : qualifiers OrganismTaxonToOrganismTaxonSpecialization : retrieval_source_ids OrganismTaxonToOrganismTaxonSpecialization --|> retrieval source : retrieval_source_ids OrganismTaxonToOrganismTaxonSpecialization : subject OrganismTaxonToOrganismTaxonSpecialization --|> organism taxon : subject OrganismTaxonToOrganismTaxonSpecialization : subject_category OrganismTaxonToOrganismTaxonSpecialization --|> ontology class : subject_category OrganismTaxonToOrganismTaxonSpecialization : subject_category_closure OrganismTaxonToOrganismTaxonSpecialization --|> ontology class : subject_category_closure OrganismTaxonToOrganismTaxonSpecialization : subject_closure OrganismTaxonToOrganismTaxonSpecialization : subject_label_closure OrganismTaxonToOrganismTaxonSpecialization : subject_namespace OrganismTaxonToOrganismTaxonSpecialization : timepoint OrganismTaxonToOrganismTaxonSpecialization : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
OrganismTaxon		 the more specific taxon Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
OrganismTaxon		 the more general taxon Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:OrganismTaxonToOrganismTaxonSpecialization
native biolink:OrganismTaxonToOrganismTaxonSpecialization

LinkML Source

Direct

name: organism taxon to organism taxon specialization
description: 'A child-parent relationship between two taxa. For example: Homo sapiens
  subclass_of Homo'
from_schema: https://w3id.org/biolink/biolink-model
is_a: organism taxon to organism taxon association
slot_usage:
  subject:
    name: subject
    description: the more specific taxon
    domain_of:
    - association
    role: child taxon
    range: organism taxon
  object:
    name: object
    description: the more general taxon
    domain_of:
    - association
    role: parent taxon
    range: organism taxon
  predicate:
    name: predicate
    domain_of:
    - predicate mapping
    - association
    subproperty_of: subclass of
defining_slots:
- predicate