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Class: OrganismToOrganismAssociation

URI: biolink:OrganismToOrganismAssociation

classDiagram class OrganismToOrganismAssociation Association <|-- OrganismToOrganismAssociation OrganismToOrganismAssociation : aggregator_knowledge_source OrganismToOrganismAssociation : category OrganismToOrganismAssociation : description OrganismToOrganismAssociation : has_attribute OrganismToOrganismAssociation --|> attribute : has_attribute OrganismToOrganismAssociation : has_evidence OrganismToOrganismAssociation --|> evidence type : has_evidence OrganismToOrganismAssociation : id OrganismToOrganismAssociation : iri OrganismToOrganismAssociation : knowledge_source OrganismToOrganismAssociation : name OrganismToOrganismAssociation : negated OrganismToOrganismAssociation : object OrganismToOrganismAssociation --|> individual organism : object OrganismToOrganismAssociation : object_category OrganismToOrganismAssociation --|> ontology class : object_category OrganismToOrganismAssociation : object_category_closure OrganismToOrganismAssociation --|> ontology class : object_category_closure OrganismToOrganismAssociation : object_closure OrganismToOrganismAssociation : object_label_closure OrganismToOrganismAssociation : object_namespace OrganismToOrganismAssociation : original_object OrganismToOrganismAssociation : original_predicate OrganismToOrganismAssociation : original_subject OrganismToOrganismAssociation : predicate OrganismToOrganismAssociation : primary_knowledge_source OrganismToOrganismAssociation : publications OrganismToOrganismAssociation --|> publication : publications OrganismToOrganismAssociation : qualifiers OrganismToOrganismAssociation --|> ontology class : qualifiers OrganismToOrganismAssociation : retrieval_source_ids OrganismToOrganismAssociation --|> retrieval source : retrieval_source_ids OrganismToOrganismAssociation : subject OrganismToOrganismAssociation --|> individual organism : subject OrganismToOrganismAssociation : subject_category OrganismToOrganismAssociation --|> ontology class : subject_category OrganismToOrganismAssociation : subject_category_closure OrganismToOrganismAssociation --|> ontology class : subject_category_closure OrganismToOrganismAssociation : subject_closure OrganismToOrganismAssociation : subject_label_closure OrganismToOrganismAssociation : subject_namespace OrganismToOrganismAssociation : timepoint OrganismToOrganismAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
IndividualOrganism		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
IndividualOrganism		 An association between two individual organisms Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:OrganismToOrganismAssociation
native biolink:OrganismToOrganismAssociation

LinkML Source

Direct

name: organism to organism association
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: individual organism
  object:
    name: object
    description: An association between two individual organisms.
    domain_of:
    - association
    range: individual organism
defining_slots:
- subject
- predicate
- object