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Class: OrganismalEntity

A named entity that is either a part of an organism, a whole organism, population or clade of organisms, excluding chemical entities

  • NOTE: this is an abstract class and should not be instantiated directly

URI: biolink:OrganismalEntity

classDiagram class OrganismalEntity SubjectOfInvestigation <|-- OrganismalEntity BiologicalEntity <|-- OrganismalEntity OrganismalEntity <|-- Bacterium OrganismalEntity <|-- Virus OrganismalEntity <|-- CellularOrganism OrganismalEntity <|-- LifeStage OrganismalEntity <|-- IndividualOrganism OrganismalEntity <|-- PopulationOfIndividualOrganisms OrganismalEntity <|-- AnatomicalEntity OrganismalEntity <|-- CellLine OrganismalEntity : category OrganismalEntity : description OrganismalEntity : full_name OrganismalEntity : has_attribute OrganismalEntity --|> attribute : has_attribute OrganismalEntity : id OrganismalEntity : in_taxon OrganismalEntity --|> organism taxon : in_taxon OrganismalEntity : in_taxon_label OrganismalEntity : iri OrganismalEntity : name OrganismalEntity : provided_by OrganismalEntity : synonym OrganismalEntity : type OrganismalEntity : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 may often be an organism attribute Entity

Usages

used by used in type used
OrganismalEntityAsAModelOfDiseaseAssociation subject range OrganismalEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:OrganismalEntity
native biolink:OrganismalEntity
exact WIKIDATA:Q7239, UMLSSG:LIVB, CARO:0001010
narrow STY:T008

LinkML Source

Direct

name: organismal entity
description: A named entity that is either a part of an organism, a whole organism,
  population or clade of organisms, excluding chemical entities
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- WIKIDATA:Q7239
- UMLSSG:LIVB
- CARO:0001010
narrow_mappings:
- STY:T008
is_a: biological entity
abstract: true
mixins:
- subject of investigation
slot_usage:
  has attribute:
    name: has attribute
    description: may often be an organism attribute
    domain_of:
    - entity