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Class: OrganismalEntityAsAModelOfDiseaseAssociation

URI: biolink:OrganismalEntityAsAModelOfDiseaseAssociation

classDiagram class OrganismalEntityAsAModelOfDiseaseAssociation ModelToDiseaseAssociationMixin <|-- OrganismalEntityAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- OrganismalEntityAsAModelOfDiseaseAssociation Association <|-- OrganismalEntityAsAModelOfDiseaseAssociation OrganismalEntityAsAModelOfDiseaseAssociation : aggregator_knowledge_source OrganismalEntityAsAModelOfDiseaseAssociation : category OrganismalEntityAsAModelOfDiseaseAssociation : description OrganismalEntityAsAModelOfDiseaseAssociation : frequency_qualifier OrganismalEntityAsAModelOfDiseaseAssociation : has_attribute OrganismalEntityAsAModelOfDiseaseAssociation --|> attribute : has_attribute OrganismalEntityAsAModelOfDiseaseAssociation : has_evidence OrganismalEntityAsAModelOfDiseaseAssociation --|> evidence type : has_evidence OrganismalEntityAsAModelOfDiseaseAssociation : id OrganismalEntityAsAModelOfDiseaseAssociation : iri OrganismalEntityAsAModelOfDiseaseAssociation : knowledge_source OrganismalEntityAsAModelOfDiseaseAssociation : name OrganismalEntityAsAModelOfDiseaseAssociation : negated OrganismalEntityAsAModelOfDiseaseAssociation : object OrganismalEntityAsAModelOfDiseaseAssociation --|> disease : object OrganismalEntityAsAModelOfDiseaseAssociation : object_category OrganismalEntityAsAModelOfDiseaseAssociation --|> ontology class : object_category OrganismalEntityAsAModelOfDiseaseAssociation : object_category_closure OrganismalEntityAsAModelOfDiseaseAssociation --|> ontology class : object_category_closure OrganismalEntityAsAModelOfDiseaseAssociation : object_closure OrganismalEntityAsAModelOfDiseaseAssociation : object_label_closure OrganismalEntityAsAModelOfDiseaseAssociation : object_namespace OrganismalEntityAsAModelOfDiseaseAssociation : onset_qualifier OrganismalEntityAsAModelOfDiseaseAssociation --|> onset : onset_qualifier OrganismalEntityAsAModelOfDiseaseAssociation : original_object OrganismalEntityAsAModelOfDiseaseAssociation : original_predicate OrganismalEntityAsAModelOfDiseaseAssociation : original_subject OrganismalEntityAsAModelOfDiseaseAssociation : predicate OrganismalEntityAsAModelOfDiseaseAssociation : primary_knowledge_source OrganismalEntityAsAModelOfDiseaseAssociation : publications OrganismalEntityAsAModelOfDiseaseAssociation --|> publication : publications OrganismalEntityAsAModelOfDiseaseAssociation : qualifiers OrganismalEntityAsAModelOfDiseaseAssociation --|> ontology class : qualifiers OrganismalEntityAsAModelOfDiseaseAssociation : retrieval_source_ids OrganismalEntityAsAModelOfDiseaseAssociation --|> retrieval source : retrieval_source_ids OrganismalEntityAsAModelOfDiseaseAssociation : severity_qualifier OrganismalEntityAsAModelOfDiseaseAssociation --|> severity value : severity_qualifier OrganismalEntityAsAModelOfDiseaseAssociation : subject OrganismalEntityAsAModelOfDiseaseAssociation --|> organismal entity : subject OrganismalEntityAsAModelOfDiseaseAssociation : subject_category OrganismalEntityAsAModelOfDiseaseAssociation --|> ontology class : subject_category OrganismalEntityAsAModelOfDiseaseAssociation : subject_category_closure OrganismalEntityAsAModelOfDiseaseAssociation --|> ontology class : subject_category_closure OrganismalEntityAsAModelOfDiseaseAssociation : subject_closure OrganismalEntityAsAModelOfDiseaseAssociation : subject_label_closure OrganismalEntityAsAModelOfDiseaseAssociation : subject_namespace OrganismalEntityAsAModelOfDiseaseAssociation : timepoint OrganismalEntityAsAModelOfDiseaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
OrganismalEntity		 A organismal entity (strain, breed) with a predisposition to a disease, or br... Association
predicate 1..1
PredicateType		 The relationship to the disease Association
object 1..1
Disease		 disease Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
severity_qualifier 0..1
SeverityValue		 a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset		 a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue		 a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:OrganismalEntityAsAModelOfDiseaseAssociation
native biolink:OrganismalEntityAsAModelOfDiseaseAssociation

LinkML Source

Direct

name: organismal entity as a model of disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
mixins:
- model to disease association mixin
- entity to disease association mixin
slot_usage:
  subject:
    name: subject
    description: A organismal entity (strain, breed) with a predisposition to a disease,
      or bred/created specifically to model a disease.
    domain_of:
    - association
    range: organismal entity
defining_slots:
- subject
- predicate
- object