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Class: PathologicalAnatomicalStructure

An anatomical structure with the potential of have an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level.

URI: biolink:PathologicalAnatomicalStructure

classDiagram class PathologicalAnatomicalStructure PathologicalEntityMixin <|-- PathologicalAnatomicalStructure AnatomicalEntity <|-- PathologicalAnatomicalStructure PathologicalAnatomicalStructure : category PathologicalAnatomicalStructure : description PathologicalAnatomicalStructure : full_name PathologicalAnatomicalStructure : has_attribute PathologicalAnatomicalStructure --|> attribute : has_attribute PathologicalAnatomicalStructure : id PathologicalAnatomicalStructure : in_taxon PathologicalAnatomicalStructure --|> organism taxon : in_taxon PathologicalAnatomicalStructure : in_taxon_label PathologicalAnatomicalStructure : iri PathologicalAnatomicalStructure : name PathologicalAnatomicalStructure : provided_by PathologicalAnatomicalStructure : synonym PathologicalAnatomicalStructure : type PathologicalAnatomicalStructure : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 may often be an organism attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:PathologicalAnatomicalStructure
native biolink:PathologicalAnatomicalStructure
exact MPATH:603

LinkML Source

Direct

name: pathological anatomical structure
description: An anatomical structure with the potential of have an abnormal or deleterious
  effect at the subcellular, cellular, multicellular, or organismal level.
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- MPATH:603
is_a: anatomical entity
mixins:
- pathological entity mixin