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Class: PathologicalProcess

A biologic function or a process having an abnormal or deleterious effect at the subcellular, cellular, multicellular, or organismal level.

URI: biolink:PathologicalProcess

classDiagram class PathologicalProcess PathologicalEntityMixin <|-- PathologicalProcess BiologicalProcess <|-- PathologicalProcess PathologicalProcess : category PathologicalProcess : description PathologicalProcess : enabled_by PathologicalProcess --|> physical entity : enabled_by PathologicalProcess : full_name PathologicalProcess : has_attribute PathologicalProcess --|> attribute : has_attribute PathologicalProcess : has_input PathologicalProcess --|> named thing : has_input PathologicalProcess : has_output PathologicalProcess --|> named thing : has_output PathologicalProcess : id PathologicalProcess : in_taxon PathologicalProcess --|> organism taxon : in_taxon PathologicalProcess : in_taxon_label PathologicalProcess : iri PathologicalProcess : name PathologicalProcess : provided_by PathologicalProcess : synonym PathologicalProcess : type PathologicalProcess : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
has_input 0..*
NamedThing		 holds between a process and a continuant, where the continuant is an input in... BiologicalProcessOrActivity
has_output 0..*
NamedThing		 holds between a process and a continuant, where the continuant is an output o... BiologicalProcessOrActivity
enabled_by 0..*
PhysicalEntity		 holds between a process and a physical entity, where the physical entity exec... BiologicalProcessOrActivity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:PathologicalProcess
native biolink:PathologicalProcess
exact OBI:1110122, NCIT:C16956, MPATH:596
narrow NCIT:C19151, EFO:0009708, STY:T046, STY:T037

LinkML Source

Direct

name: pathological process
description: A biologic function or a process having an abnormal or deleterious effect
  at the subcellular, cellular, multicellular, or organismal level.
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- OBI:1110122
- NCIT:C16956
- MPATH:596
narrow_mappings:
- NCIT:C19151
- EFO:0009708
- STY:T046
- STY:T037
is_a: biological process
mixins:
- pathological entity mixin