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Class: PhenotypicFeature

A combination of entity and quality that makes up a phenotyping statement. An observable characteristic of an individual resulting from the interaction of its genotype with its molecular and physical environment.

URI: biolink:PhenotypicFeature

classDiagram class PhenotypicFeature DiseaseOrPhenotypicFeature <|-- PhenotypicFeature PhenotypicFeature <|-- BehavioralFeature PhenotypicFeature <|-- ClinicalFinding PhenotypicFeature : category PhenotypicFeature : description PhenotypicFeature : full_name PhenotypicFeature : has_attribute PhenotypicFeature --|> attribute : has_attribute PhenotypicFeature : id PhenotypicFeature : in_taxon PhenotypicFeature --|> organism taxon : in_taxon PhenotypicFeature : in_taxon_label PhenotypicFeature : iri PhenotypicFeature : name PhenotypicFeature : provided_by PhenotypicFeature : synonym PhenotypicFeature : type PhenotypicFeature : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
GenotypeToPhenotypicFeatureAssociation object range PhenotypicFeature
ExposureEventToPhenotypicFeatureAssociation object range PhenotypicFeature
DiseaseToPhenotypicFeatureAssociation object range PhenotypicFeature
CaseToPhenotypicFeatureAssociation object range PhenotypicFeature
GeneToPhenotypicFeatureAssociation object range PhenotypicFeature
VariantToPhenotypicFeatureAssociation object range PhenotypicFeature

Aliases

  • sign
  • symptom
  • phenotype
  • trait
  • endophenotype

Examples

Value
MP:0001262

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • HP

  • EFO

  • NCIT

  • UMLS

  • MEDDRA

  • MP

  • ZP

  • UPHENO

  • APO

  • FBcv

  • WBPhenotype

  • SNOMEDCT

  • MESH

  • XPO

  • FYPO

  • TO

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:PhenotypicFeature
native biolink:PhenotypicFeature
exact UPHENO:0001001, SIO:010056, WIKIDATA:Q104053, UMLS:C4021819, NCIT:C16977, SNOMEDCT:8116006, MESH:D010641
narrow STY:T184, WIKIDATA:Q169872, WIKIDATA:Q25203551, ZP:00000000, FBcv:0001347, HP:0000118, MP:0000001, WBPhenotype:0000886, XPO:00000000, FYPO:0000001, APO:0000017, TO:0000387
broad BFO:0000019, PATO:0000001

LinkML Source

Direct

name: phenotypic feature
id_prefixes:
- HP
- EFO
- NCIT
- UMLS
- MEDDRA
- MP
- ZP
- UPHENO
- APO
- FBcv
- WBPhenotype
- SNOMEDCT
- MESH
- XPO
- FYPO
- TO
description: A combination of entity and quality that makes up a phenotyping statement.
  An observable characteristic of an  individual resulting from the interaction of
  its genotype with its molecular and physical environment.
examples:
- value: MP:0001262
  description: decreased body weight
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- sign
- symptom
- phenotype
- trait
- endophenotype
exact_mappings:
- UPHENO:0001001
- SIO:010056
- WIKIDATA:Q104053
- UMLS:C4021819
- NCIT:C16977
- SNOMEDCT:8116006
- MESH:D010641
narrow_mappings:
- STY:T184
- WIKIDATA:Q169872
- WIKIDATA:Q25203551
- ZP:00000000
- FBcv:0001347
- HP:0000118
- MP:0000001
- WBPhenotype:0000886
- XPO:00000000
- FYPO:0000001
- APO:0000017
- TO:0000387
broad_mappings:
- BFO:0000019
- PATO:0000001
is_a: disease or phenotypic feature