Skip to content

Class: PhysicalEntity

An entity that has material reality (a.k.a. physical essence).

URI: biolink:PhysicalEntity

classDiagram class PhysicalEntity PhysicalEssence <|-- PhysicalEntity NamedThing <|-- PhysicalEntity PhysicalEntity <|-- MaterialSample PhysicalEntity : category PhysicalEntity : description PhysicalEntity : full_name PhysicalEntity : has_attribute PhysicalEntity --|> attribute : has_attribute PhysicalEntity : id PhysicalEntity : iri PhysicalEntity : name PhysicalEntity : provided_by PhysicalEntity : synonym PhysicalEntity : type PhysicalEntity : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
BiologicalProcessOrActivity enabled_by range PhysicalEntity
BiologicalProcess enabled_by range PhysicalEntity
Pathway enabled_by range PhysicalEntity
PhysiologicalProcess enabled_by range PhysicalEntity
Behavior enabled_by range PhysicalEntity
PathologicalProcess enabled_by range PhysicalEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:PhysicalEntity
native biolink:PhysicalEntity
exact STY:T072
narrow STY:T073

LinkML Source

Direct

name: physical entity
description: An entity that has material reality (a.k.a. physical essence).
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- STY:T072
narrow_mappings:
- STY:T073
is_a: named thing
mixins:
- physical essence