Class: PhysicalEssence
Semantic mixin concept. Pertains to entities that have physical properties such as mass, volume, or charge.
URI: biolink:PhysicalEssence
classDiagram
class PhysicalEssence
PhysicalEssenceOrOccurrent <|-- PhysicalEssence
PhysicalEssence <|-- PhysicalEntity
PhysicalEssence <|-- ChemicalEntity
PhysicalEssence <|-- NucleicAcidEntity
PhysicalEssence <|-- RegulatoryRegion
PhysicalEssence <|-- AccessibleDnaRegion
PhysicalEssence <|-- TranscriptionFactorBindingSite
PhysicalEssence <|-- AnatomicalEntity
PhysicalEssence <|-- Gene
PhysicalEssence <|-- Genome
PhysicalEssence <|-- Genotype
PhysicalEssence <|-- Haplotype
PhysicalEssence <|-- SequenceVariant
PhysicalEssence <|-- ReagentTargetedGene
PhysicalEssence <|-- GenomicBackgroundExposure
Inheritance
Slots
| Name |
Cardinality and Range |
Description |
Inheritance |
|
|
|
|
Mixin Usage
| mixed into |
description |
| PhysicalEntity |
An entity that has material reality (a |
| ChemicalEntity |
A chemical entity is a physical entity that pertains to chemistry or biochemi... |
| NucleicAcidEntity |
A nucleic acid entity is a molecular entity characterized by availability in ... |
| RegulatoryRegion |
A region (or regions) of the genome that contains known or putative regulator... |
| AccessibleDnaRegion |
A region (or regions) of a chromatinized genome that has been measured to be ... |
| TranscriptionFactorBindingSite |
A region (or regions) of the genome that contains a region of DNA known or pr... |
| AnatomicalEntity |
A subcellular location, cell type or gross anatomical part |
| Gene |
A region (or regions) that includes all of the sequence elements necessary to... |
| Genome |
A genome is the sum of genetic material within a cell or virion |
| Genotype |
An information content entity that describes a genome by specifying the total... |
| Haplotype |
A set of zero or more Alleles on a single instance of a Sequence[VMC] |
| SequenceVariant |
A sequence_variant is a non exact copy of a sequence_feature or genome exhibi... |
| ReagentTargetedGene |
A gene altered in its expression level in the context of some experiment as a... |
| GenomicBackgroundExposure |
A genomic background exposure is where an individual's specific genomic backg... |
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
| Mapping Type |
Mapped Value |
| self |
biolink:PhysicalEssence |
| native |
biolink:PhysicalEssence |
LinkML Source
Direct
name: physical essence
description: Semantic mixin concept. Pertains to entities that have physical properties
such as mass, volume, or charge.
from_schema: https://w3id.org/biolink/biolink-model
is_a: physical essence or occurrent
mixin: true