Skip to content

Class: Polypeptide

A polypeptide is a molecular entity characterized by availability in protein databases of amino-acid-based sequence representations of its precise primary structure; for convenience of representation, partial sequences of various kinds are included, even if they do not represent a physical molecule.

URI: biolink:Polypeptide

classDiagram class Polypeptide ChemicalEntityOrGeneOrGeneProduct <|-- Polypeptide ChemicalEntityOrProteinOrPolypeptide <|-- Polypeptide BiologicalEntity <|-- Polypeptide Polypeptide <|-- Protein Polypeptide : category Polypeptide : description Polypeptide : full_name Polypeptide : has_attribute Polypeptide --|> attribute : has_attribute Polypeptide : id Polypeptide : in_taxon Polypeptide --|> organism taxon : in_taxon Polypeptide : in_taxon_label Polypeptide : iri Polypeptide : name Polypeptide : provided_by Polypeptide : synonym Polypeptide : type Polypeptide : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • amino acid entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • UniProtKB

  • PR

  • ENSEMBL

  • FB

  • UMLS

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:Polypeptide
native biolink:Polypeptide
narrow SO:0000104, STY:T116, STY:T087

LinkML Source

Direct

name: polypeptide
id_prefixes:
- UniProtKB
- PR
- ENSEMBL
- FB
- UMLS
description: A polypeptide is a molecular entity characterized by availability in
  protein databases of amino-acid-based sequence representations of its precise primary
  structure; for convenience of representation, partial sequences of various kinds
  are included, even if they do not represent a physical molecule.
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- amino acid entity
narrow_mappings:
- SO:0000104
- STY:T116
- STY:T087
is_a: biological entity
mixins:
- chemical entity or gene or gene product
- chemical entity or protein or polypeptide