Class: Protein

A gene product that is composed of a chain of amino acid sequences and is produced by ribosome-mediated translation of mRNA

URI: biolink:Protein

classDiagram class Protein GeneProductMixin <|-- Protein Polypeptide <|-- Protein Protein <|-- ProteinIsoform Protein : category Protein : description Protein : full_name Protein : has_attribute Protein --|> attribute : has_attribute Protein : id Protein : in_taxon Protein --|> organism taxon : in_taxon Protein : in_taxon_label Protein : iri Protein : name Protein : provided_by Protein : synonym Protein : type Protein : xref

Inheritance

Entity
- NamedThing
  - BiologicalEntity [ ThingWithTaxon]
    - Polypeptide [ ChemicalEntityOrGeneOrGeneProduct ChemicalEntityOrProteinOrPolypeptide]
      - Protein [ GeneProductMixin]
        
        ProteinIsoform [ GeneProductIsoformMixin]

Slots

Name	Cardinality and Range	Description	Inheritance
synonym	0..* LabelType	Alternate human-readable names for a thing	GeneProductMixin, NamedThing
xref	0..* Uriorcurie	A database cross reference or alternative identifier for a NamedThing or edge...	GeneProductMixin, NamedThing
in_taxon	0..* OrganismTaxon	connects an entity to its taxonomic classification	ThingWithTaxon
in_taxon_label	0..1 LabelType	The human readable scientific name for the taxon of the entity	ThingWithTaxon
provided_by	0..* String	The value in this node property represents the knowledge provider that create...	NamedThing
full_name	0..1 LabelType	a long-form human readable name for a thing	NamedThing
id	1..1 String	A unique identifier for an entity	Entity
iri	0..1 IriType	An IRI for an entity	Entity
category	1..* CategoryType	Name of the high level ontology class in which this entity is categorized	Entity
type	0..* String		Entity
name	0..1 SymbolType	genes are typically designated by a short symbol and a full name	Entity, MacromolecularMachineMixin
description	0..1 NarrativeText	a human-readable description of an entity	Entity
has_attribute	0..* Attribute	connects any entity to an attribute	Entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

UniProtKB
PR
ENSEMBL
FB
UMLS
MESH
ncats.drug

Schema Source

from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type	Mapped Value
self	biolink:Protein
native	biolink:Protein
exact	PR:000000001, SIO:010043, WIKIDATA:Q8054
narrow	STY:T126, STY:T192
broad	bioschemas:Protein

LinkML Source

Direct

name: protein
id_prefixes:
- UniProtKB
- PR
- ENSEMBL
- FB
- UMLS
- MESH
- ncats.drug
description: A gene product that is composed of a chain of amino acid sequences and
  is produced by ribosome-mediated translation of mRNA
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- PR:000000001
- SIO:010043
- WIKIDATA:Q8054
narrow_mappings:
- STY:T126
- STY:T192
broad_mappings:
- bioschemas:Protein
is_a: polypeptide
mixins:
- gene product mixin