Skip to content

Class: ProteinDomain

A conserved part of protein sequence and (tertiary) structure that can evolve, function, and exist independently of the rest of the protein chain. Protein domains maintain their structure and function independently of the proteins in which they are found. e.g. an SH3 domain.

URI: biolink:ProteinDomain

classDiagram class ProteinDomain GeneGroupingMixin <|-- ProteinDomain ChemicalEntityOrGeneOrGeneProduct <|-- ProteinDomain BiologicalEntity <|-- ProteinDomain ProteinDomain : category ProteinDomain : description ProteinDomain : full_name ProteinDomain : has_attribute ProteinDomain --|> attribute : has_attribute ProteinDomain : has_gene_or_gene_product ProteinDomain --|> gene : has_gene_or_gene_product ProteinDomain : id ProteinDomain : in_taxon ProteinDomain --|> organism taxon : in_taxon ProteinDomain : in_taxon_label ProteinDomain : iri ProteinDomain : name ProteinDomain : provided_by ProteinDomain : synonym ProteinDomain : type ProteinDomain : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_gene_or_gene_product 0..*
Gene		 connects an entity with one or more gene or gene products GeneGroupingMixin
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ProteinDomain
native biolink:ProteinDomain
exact NCIT:C13379, SIO:001379, UMLS:C1514562

LinkML Source

Direct

name: protein domain
description: A conserved part of protein sequence and (tertiary) structure that can
  evolve, function, and exist independently of the rest of the protein chain. Protein
  domains maintain their structure and function independently of the proteins in which
  they are found. e.g. an SH3 domain.
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- NCIT:C13379
- SIO:001379
- UMLS:C1514562
is_a: biological entity
mixins:
- gene grouping mixin
- chemical entity or gene or gene product