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Class: ProteinIsoform

Represents a protein that is a specific isoform of the canonical or reference protein. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4114032/

URI: biolink:ProteinIsoform

classDiagram class ProteinIsoform GeneProductIsoformMixin <|-- ProteinIsoform Protein <|-- ProteinIsoform ProteinIsoform : category ProteinIsoform : description ProteinIsoform : full_name ProteinIsoform : has_attribute ProteinIsoform --|> attribute : has_attribute ProteinIsoform : id ProteinIsoform : in_taxon ProteinIsoform --|> organism taxon : in_taxon ProteinIsoform : in_taxon_label ProteinIsoform : iri ProteinIsoform : name ProteinIsoform : provided_by ProteinIsoform : synonym ProteinIsoform : type ProteinIsoform : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
synonym 0..*
LabelType		 Alternate human-readable names for a thing GeneProductMixin, NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... GeneProductMixin, NamedThing
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
SymbolType		 genes are typically designated by a short symbol and a full name Entity, MacromolecularMachineMixin
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • proteoform

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • UniProtKB

  • UNIPROT.ISOFORM

  • PR

  • ENSEMBL

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ProteinIsoform
native biolink:ProteinIsoform

LinkML Source

Direct

name: protein isoform
id_prefixes:
- UniProtKB
- UNIPROT.ISOFORM
- PR
- ENSEMBL
description: Represents a protein that is a specific isoform of the canonical or reference
  protein. See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4114032/
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- proteoform
is_a: protein
mixins:
- gene product isoform mixin