Class: Publication
_Any ‘published’ piece of information. Publications are considered broadly to include any document or document part made available in print or on the web - which may include scientific journal issues, individual articles, and books - as well as things like pre-prints, white papers, patents, drug labels, web pages, protocol documents, and even a part of a publication if of significant knowledge scope (e.g. a figure, figure legend, or section highlighted by NLP). _
URI: biolink:Publication
classDiagram
class Publication
InformationContentEntity <|-- Publication
Publication <|-- Book
Publication <|-- BookChapter
Publication <|-- Serial
Publication <|-- Article
Publication <|-- Patent
Publication <|-- WebPage
Publication <|-- PreprintPublication
Publication <|-- DrugLabel
Publication : authors
Publication --|> agent : authors
Publication : category
Publication : creation_date
Publication : description
Publication : format
Publication : full_name
Publication : has_attribute
Publication --|> attribute : has_attribute
Publication : id
Publication : iri
Publication : keywords
Publication : license
Publication : mesh_terms
Publication : name
Publication : pages
Publication : provided_by
Publication : rights
Publication : summary
Publication : synonym
Publication : type
Publication : xref
Inheritance
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| authors | 0..* Agent |
connects an publication to the list of authors who contributed to the publica... | direct |
| pages | 0..* String |
When a 2-tuple of page numbers are provided, they represent the start and end... | direct |
| summary | 0..1 String |
executive summary of a publication | direct |
| keywords | 0..* String |
keywords tagging a publication | direct |
| mesh_terms | 0..* Uriorcurie |
mesh terms tagging a publication | direct |
| xref | 0..* Uriorcurie |
A database cross reference or alternative identifier for a NamedThing or edge... | direct |
| license | 0..1 String |
InformationContentEntity | |
| rights | 0..1 String |
InformationContentEntity | |
| format | 0..1 String |
InformationContentEntity | |
| creation_date | 0..1 Date |
date on which an entity was created | InformationContentEntity |
| provided_by | 0..* String |
The value in this node property represents the knowledge provider that create... | NamedThing |
| full_name | 0..1 LabelType |
a long-form human readable name for a thing | NamedThing |
| synonym | 0..* LabelType |
Alternate human-readable names for a thing | NamedThing |
| id | 1..1 String |
Different kinds of publication subtypes will have different preferred identif... | Entity |
| iri | 0..1 IriType |
An IRI for an entity | Entity |
| category | 1..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
| type | 0..* String |
Entity | |
| name | 0..1 LabelType |
the 'title' of the publication is generally recorded in the 'name' property (... | Entity |
| description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
| has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Usages
Identifier and Mapping Information
Valid ID Prefixes
Instances of this class should have identifiers with one of the following prefixes:
-
PMID
-
PMC
-
doi
-
NLMID
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | biolink:Publication |
| native | biolink:Publication |
| exact | IAO:0000311 |
| narrow | IAO:0000013, STY:T170 |
LinkML Source
Direct
name: publication
id_prefixes:
- PMID
- PMC
- doi
- NLMID
description: 'Any ‘published’ piece of information. Publications are considered broadly to
include any document or document part made available in print or on the web - which
may include scientific journal issues, individual articles, and books - as well
as things like pre-prints, white papers, patents, drug labels, web pages, protocol
documents, and even a part of a publication if of significant knowledge scope
(e.g. a figure, figure legend, or section highlighted by NLP). '
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- IAO:0000311
narrow_mappings:
- IAO:0000013
- STY:T170
is_a: information content entity
slots:
- authors
- pages
- summary
- keywords
- mesh terms
- xref
slot_usage:
id:
name: id
description: 'Different kinds of publication subtypes will have different preferred
identifiers (curies when feasible). Precedence of identifiers for scientific
articles is as follows: PMID if available; DOI if not; actual alternate CURIE
otherwise. Enclosing publications (i.e. referenced by ''published in'' node
property) such as books and journals, should have industry-standard identifier
such as from ISBN and ISSN.'
domain_of:
- ontology class
- entity
name:
name: name
description: the 'title' of the publication is generally recorded in the 'name'
property (inherited from NamedThing). The field name 'title' is now also tagged
as an acceptable alias for the node property 'name' (just in case).
domain_of:
- attribute
- entity
- macromolecular machine mixin
publication type:
name: publication type
required: true
pages:
name: pages
description: When a 2-tuple of page numbers are provided, they represent the start
and end page of the publication within its parent publication context. For books,
this may be set to the total number of pages of the book.
multivalued: true
domain_of:
- publication