Skip to content

Class: ReactionToParticipantAssociation

URI: biolink:ReactionToParticipantAssociation

classDiagram class ReactionToParticipantAssociation ChemicalToChemicalAssociation <|-- ReactionToParticipantAssociation ReactionToParticipantAssociation <|-- ReactionToCatalystAssociation ReactionToParticipantAssociation : aggregator_knowledge_source ReactionToParticipantAssociation : category ReactionToParticipantAssociation : description ReactionToParticipantAssociation : has_attribute ReactionToParticipantAssociation --|> attribute : has_attribute ReactionToParticipantAssociation : has_evidence ReactionToParticipantAssociation --|> evidence type : has_evidence ReactionToParticipantAssociation : id ReactionToParticipantAssociation : iri ReactionToParticipantAssociation : knowledge_source ReactionToParticipantAssociation : name ReactionToParticipantAssociation : negated ReactionToParticipantAssociation : object ReactionToParticipantAssociation --|> chemical entity : object ReactionToParticipantAssociation : object_category ReactionToParticipantAssociation --|> ontology class : object_category ReactionToParticipantAssociation : object_category_closure ReactionToParticipantAssociation --|> ontology class : object_category_closure ReactionToParticipantAssociation : object_closure ReactionToParticipantAssociation : object_label_closure ReactionToParticipantAssociation : object_namespace ReactionToParticipantAssociation : original_object ReactionToParticipantAssociation : original_predicate ReactionToParticipantAssociation : original_subject ReactionToParticipantAssociation : predicate ReactionToParticipantAssociation : primary_knowledge_source ReactionToParticipantAssociation : publications ReactionToParticipantAssociation --|> publication : publications ReactionToParticipantAssociation : qualifiers ReactionToParticipantAssociation --|> ontology class : qualifiers ReactionToParticipantAssociation : reaction_direction ReactionToParticipantAssociation --|> ReactionDirectionEnum : reaction_direction ReactionToParticipantAssociation : reaction_side ReactionToParticipantAssociation --|> ReactionSideEnum : reaction_side ReactionToParticipantAssociation : retrieval_source_ids ReactionToParticipantAssociation --|> retrieval source : retrieval_source_ids ReactionToParticipantAssociation : stoichiometry ReactionToParticipantAssociation : subject ReactionToParticipantAssociation --|> molecular entity : subject ReactionToParticipantAssociation : subject_category ReactionToParticipantAssociation --|> ontology class : subject_category ReactionToParticipantAssociation : subject_category_closure ReactionToParticipantAssociation --|> ontology class : subject_category_closure ReactionToParticipantAssociation : subject_closure ReactionToParticipantAssociation : subject_label_closure ReactionToParticipantAssociation : subject_namespace ReactionToParticipantAssociation : timepoint ReactionToParticipantAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
stoichiometry 0..1
Integer		 the relationship between the relative quantities of substances taking part in... direct
reaction_direction 0..1
ReactionDirectionEnum		 the direction of a reaction as constrained by the direction enum (ie: left_to... direct
reaction_side 0..1
ReactionSideEnum		 the side of a reaction being modeled (ie: left or right) direct
subject 1..1
MolecularEntity		 the chemical entity or entity that is an interactor Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
ChemicalEntity		 the chemical element that is the target of the statement Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ReactionToParticipantAssociation
native biolink:ReactionToParticipantAssociation

LinkML Source

Direct

name: reaction to participant association
from_schema: https://w3id.org/biolink/biolink-model
is_a: chemical to chemical association
slots:
- stoichiometry
- reaction direction
- reaction side
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: molecular entity
defining_slots:
- subject
- predicate
- object