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Class: RegulatoryRegion

A region (or regions) of the genome that contains known or putative regulatory elements that act in cis- or trans- to affect the transcription of gene

URI: biolink:RegulatoryRegion

classDiagram class RegulatoryRegion GenomicEntity <|-- RegulatoryRegion ChemicalEntityOrGeneOrGeneProduct <|-- RegulatoryRegion PhysicalEssence <|-- RegulatoryRegion OntologyClass <|-- RegulatoryRegion BiologicalEntity <|-- RegulatoryRegion RegulatoryRegion <|-- AccessibleDnaRegion RegulatoryRegion <|-- TranscriptionFactorBindingSite RegulatoryRegion : category RegulatoryRegion : description RegulatoryRegion : full_name RegulatoryRegion : has_attribute RegulatoryRegion --|> attribute : has_attribute RegulatoryRegion : has_biological_sequence RegulatoryRegion : id RegulatoryRegion : in_taxon RegulatoryRegion --|> organism taxon : in_taxon RegulatoryRegion : in_taxon_label RegulatoryRegion : iri RegulatoryRegion : name RegulatoryRegion : provided_by RegulatoryRegion : synonym RegulatoryRegion : type RegulatoryRegion : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • regulatory element

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:RegulatoryRegion
native biolink:RegulatoryRegion
exact SO:0005836, SIO:001225, WIKIDATA:Q3238407

LinkML Source

Direct

name: regulatory region
description: A region (or regions) of the genome that contains known or putative regulatory
  elements that act in cis- or trans- to affect the transcription of gene
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- regulatory element
exact_mappings:
- SO:0005836
- SIO:001225
- WIKIDATA:Q3238407
is_a: biological entity
mixins:
- genomic entity
- chemical entity or gene or gene product
- physical essence
- ontology class