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Class: RetrievalSource

Provides information about how a particular InformationResource served as a source from which knowledge expressed in an Edge, or data used to generate this knowledge, was retrieved.

URI: biolink:RetrievalSource

classDiagram class RetrievalSource InformationContentEntity <|-- RetrievalSource RetrievalSource : category RetrievalSource : creation_date RetrievalSource : description RetrievalSource : format RetrievalSource : full_name RetrievalSource : has_attribute RetrievalSource --|> attribute : has_attribute RetrievalSource : id RetrievalSource : iri RetrievalSource : license RetrievalSource : name RetrievalSource : provided_by RetrievalSource : resource_id RetrievalSource : resource_role RetrievalSource --|> ResourceRoleEnum : resource_role RetrievalSource : rights RetrievalSource : synonym RetrievalSource : type RetrievalSource : upstream_resource_ids RetrievalSource : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
resource_id 1..1
Uriorcurie
The InformationResource that served as a source for the knowledge expressed i... direct
resource_role 1..1
ResourceRoleEnum
The role of the InformationResource in the retrieval of the knowledge express... direct
upstream_resource_ids 0..1
Uriorcurie
The InformationResources that served as a source for the InformationResource ... direct
xref 0..*
Uriorcurie
A database cross reference or alternative identifier for a NamedThing or edge... direct
license 0..1
String
InformationContentEntity
rights 0..1
String
InformationContentEntity
format 0..1
String
InformationContentEntity
creation_date 0..1
Date
date on which an entity was created InformationContentEntity
provided_by 0..*
String
The value in this node property represents the knowledge provider that create... NamedThing
full_name 0..1
LabelType
a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType
Alternate human-readable names for a thing NamedThing
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 1..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Usages

used by used in type used
RetrievalSource resource_id domain RetrievalSource
RetrievalSource resource_role domain RetrievalSource
RetrievalSource upstream_resource_ids domain RetrievalSource
Association retrieval_source_ids range RetrievalSource
ChemicalEntityAssessesNamedThingAssociation retrieval_source_ids range RetrievalSource
ContributorAssociation retrieval_source_ids range RetrievalSource
GenotypeToGenotypePartAssociation retrieval_source_ids range RetrievalSource
GenotypeToGeneAssociation retrieval_source_ids range RetrievalSource
GenotypeToVariantAssociation retrieval_source_ids range RetrievalSource
GeneToGeneAssociation retrieval_source_ids range RetrievalSource
GeneToGeneHomologyAssociation retrieval_source_ids range RetrievalSource
GeneToGeneFamilyAssociation retrieval_source_ids range RetrievalSource
GeneToGeneCoexpressionAssociation retrieval_source_ids range RetrievalSource
PairwiseGeneToGeneInteraction retrieval_source_ids range RetrievalSource
PairwiseMolecularInteraction retrieval_source_ids range RetrievalSource
CellLineToDiseaseOrPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
ChemicalToChemicalAssociation retrieval_source_ids range RetrievalSource
ReactionToParticipantAssociation retrieval_source_ids range RetrievalSource
ReactionToCatalystAssociation retrieval_source_ids range RetrievalSource
ChemicalToChemicalDerivationAssociation retrieval_source_ids range RetrievalSource
ChemicalToDiseaseOrPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
GeneToPathwayAssociation retrieval_source_ids range RetrievalSource
MolecularActivityToPathwayAssociation retrieval_source_ids range RetrievalSource
ChemicalToPathwayAssociation retrieval_source_ids range RetrievalSource
NamedThingAssociatedWithLikelihoodOfNamedThingAssociation retrieval_source_ids range RetrievalSource
ChemicalGeneInteractionAssociation retrieval_source_ids range RetrievalSource
ChemicalAffectsGeneAssociation retrieval_source_ids range RetrievalSource
GeneAffectsChemicalAssociation retrieval_source_ids range RetrievalSource
DrugToGeneAssociation retrieval_source_ids range RetrievalSource
MaterialSampleDerivationAssociation retrieval_source_ids range RetrievalSource
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
DiseaseToExposureEventAssociation retrieval_source_ids range RetrievalSource
ExposureEventToOutcomeAssociation retrieval_source_ids range RetrievalSource
InformationContentEntityToNamedThingAssociation retrieval_source_ids range RetrievalSource
DiseaseOrPhenotypicFeatureToLocationAssociation retrieval_source_ids range RetrievalSource
DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation retrieval_source_ids range RetrievalSource
GenotypeToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
ExposureEventToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
DiseaseToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
CaseToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
BehaviorToBehavioralFeatureAssociation retrieval_source_ids range RetrievalSource
GeneToDiseaseOrPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
GeneToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
GeneToDiseaseAssociation retrieval_source_ids range RetrievalSource
CausalGeneToDiseaseAssociation retrieval_source_ids range RetrievalSource
CorrelatedGeneToDiseaseAssociation retrieval_source_ids range RetrievalSource
DruggableGeneToDiseaseAssociation retrieval_source_ids range RetrievalSource
VariantToGeneAssociation retrieval_source_ids range RetrievalSource
VariantToGeneExpressionAssociation retrieval_source_ids range RetrievalSource
VariantToPopulationAssociation retrieval_source_ids range RetrievalSource
PopulationToPopulationAssociation retrieval_source_ids range RetrievalSource
VariantToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
VariantToDiseaseAssociation retrieval_source_ids range RetrievalSource
GenotypeToDiseaseAssociation retrieval_source_ids range RetrievalSource
GeneAsAModelOfDiseaseAssociation retrieval_source_ids range RetrievalSource
VariantAsAModelOfDiseaseAssociation retrieval_source_ids range RetrievalSource
GenotypeAsAModelOfDiseaseAssociation retrieval_source_ids range RetrievalSource
CellLineAsAModelOfDiseaseAssociation retrieval_source_ids range RetrievalSource
OrganismalEntityAsAModelOfDiseaseAssociation retrieval_source_ids range RetrievalSource
OrganismToOrganismAssociation retrieval_source_ids range RetrievalSource
TaxonToTaxonAssociation retrieval_source_ids range RetrievalSource
GeneHasVariantThatContributesToDiseaseAssociation retrieval_source_ids range RetrievalSource
GeneToExpressionSiteAssociation retrieval_source_ids range RetrievalSource
SequenceVariantModulatesTreatmentAssociation retrieval_source_ids range RetrievalSource
FunctionalAssociation retrieval_source_ids range RetrievalSource
MacromolecularMachineToMolecularActivityAssociation retrieval_source_ids range RetrievalSource
MacromolecularMachineToBiologicalProcessAssociation retrieval_source_ids range RetrievalSource
MacromolecularMachineToCellularComponentAssociation retrieval_source_ids range RetrievalSource
MolecularActivityToChemicalEntityAssociation retrieval_source_ids range RetrievalSource
MolecularActivityToMolecularActivityAssociation retrieval_source_ids range RetrievalSource
GeneToGoTermAssociation retrieval_source_ids range RetrievalSource
EntityToDiseaseAssociation retrieval_source_ids range RetrievalSource
EntityToPhenotypicFeatureAssociation retrieval_source_ids range RetrievalSource
SequenceAssociation retrieval_source_ids range RetrievalSource
GenomicSequenceLocalization retrieval_source_ids range RetrievalSource
SequenceFeatureRelationship retrieval_source_ids range RetrievalSource
TranscriptToGeneRelationship retrieval_source_ids range RetrievalSource
GeneToGeneProductRelationship retrieval_source_ids range RetrievalSource
ExonToTranscriptRelationship retrieval_source_ids range RetrievalSource
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation retrieval_source_ids range RetrievalSource
AnatomicalEntityToAnatomicalEntityAssociation retrieval_source_ids range RetrievalSource
AnatomicalEntityToAnatomicalEntityPartOfAssociation retrieval_source_ids range RetrievalSource
AnatomicalEntityToAnatomicalEntityOntogenicAssociation retrieval_source_ids range RetrievalSource
OrganismTaxonToOrganismTaxonAssociation retrieval_source_ids range RetrievalSource
OrganismTaxonToOrganismTaxonSpecialization retrieval_source_ids range RetrievalSource
OrganismTaxonToOrganismTaxonInteraction retrieval_source_ids range RetrievalSource
OrganismTaxonToEnvironmentAssociation retrieval_source_ids range RetrievalSource

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:RetrievalSource
native biolink:RetrievalSource

LinkML Source

Direct

name: retrieval source
description: Provides information about how a particular InformationResource served
  as a source from which knowledge expressed in an Edge, or data used to generate
  this knowledge, was retrieved.
from_schema: https://w3id.org/biolink/biolink-model
is_a: information content entity
slots:
- resource id
- resource role
- upstream resource ids
- xref
slot_usage:
  resource id:
    name: resource id
    description: The InformationResource that served as a source for the knowledge
      expressed in an Edge, or data used to generate this knowledge.
    domain_of:
    - retrieval source
    required: true
  resource role:
    name: resource role
    description: The role of the InformationResource in the retrieval of the knowledge
      expressed in an Edge, or data used to generate this knowledge.
    domain_of:
    - retrieval source
    required: true
  upstream resource ids:
    name: upstream resource ids
    description: The InformationResources that served as a source for the InformationResource
      that served as a source for the knowledge expressed in an Edge, or data used
      to generate this knowledge.
    domain_of:
    - retrieval source