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Class: SequenceAssociation

An association between a sequence feature and a nucleic acid entity it is localized to.

URI: biolink:SequenceAssociation

classDiagram class SequenceAssociation Association <|-- SequenceAssociation SequenceAssociation <|-- GenomicSequenceLocalization SequenceAssociation : aggregator_knowledge_source SequenceAssociation : category SequenceAssociation : description SequenceAssociation : has_attribute SequenceAssociation --|> attribute : has_attribute SequenceAssociation : has_evidence SequenceAssociation --|> evidence type : has_evidence SequenceAssociation : id SequenceAssociation : iri SequenceAssociation : knowledge_source SequenceAssociation : name SequenceAssociation : negated SequenceAssociation : object SequenceAssociation --|> named thing : object SequenceAssociation : object_category SequenceAssociation --|> ontology class : object_category SequenceAssociation : object_category_closure SequenceAssociation --|> ontology class : object_category_closure SequenceAssociation : object_closure SequenceAssociation : object_label_closure SequenceAssociation : object_namespace SequenceAssociation : original_object SequenceAssociation : original_predicate SequenceAssociation : original_subject SequenceAssociation : predicate SequenceAssociation : primary_knowledge_source SequenceAssociation : publications SequenceAssociation --|> publication : publications SequenceAssociation : qualifiers SequenceAssociation --|> ontology class : qualifiers SequenceAssociation : retrieval_source_ids SequenceAssociation --|> retrieval source : retrieval_source_ids SequenceAssociation : subject SequenceAssociation --|> named thing : subject SequenceAssociation : subject_category SequenceAssociation --|> ontology class : subject_category SequenceAssociation : subject_category_closure SequenceAssociation --|> ontology class : subject_category_closure SequenceAssociation : subject_closure SequenceAssociation : subject_label_closure SequenceAssociation : subject_namespace SequenceAssociation : timepoint SequenceAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
NamedThing		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
NamedThing		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:SequenceAssociation
native biolink:SequenceAssociation

LinkML Source

Direct

name: sequence association
description: An association between a sequence feature and a nucleic acid entity it
  is localized to.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association