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Class: SequenceFeatureRelationship

For example, a particular exon is part of a particular transcript or gene

URI: biolink:SequenceFeatureRelationship

classDiagram class SequenceFeatureRelationship Association <|-- SequenceFeatureRelationship SequenceFeatureRelationship <|-- TranscriptToGeneRelationship SequenceFeatureRelationship <|-- GeneToGeneProductRelationship SequenceFeatureRelationship <|-- ExonToTranscriptRelationship SequenceFeatureRelationship : aggregator_knowledge_source SequenceFeatureRelationship : category SequenceFeatureRelationship : description SequenceFeatureRelationship : has_attribute SequenceFeatureRelationship --|> attribute : has_attribute SequenceFeatureRelationship : has_evidence SequenceFeatureRelationship --|> evidence type : has_evidence SequenceFeatureRelationship : id SequenceFeatureRelationship : iri SequenceFeatureRelationship : knowledge_source SequenceFeatureRelationship : name SequenceFeatureRelationship : negated SequenceFeatureRelationship : object SequenceFeatureRelationship --|> nucleic acid entity : object SequenceFeatureRelationship : object_category SequenceFeatureRelationship --|> ontology class : object_category SequenceFeatureRelationship : object_category_closure SequenceFeatureRelationship --|> ontology class : object_category_closure SequenceFeatureRelationship : object_closure SequenceFeatureRelationship : object_label_closure SequenceFeatureRelationship : object_namespace SequenceFeatureRelationship : original_object SequenceFeatureRelationship : original_predicate SequenceFeatureRelationship : original_subject SequenceFeatureRelationship : predicate SequenceFeatureRelationship : primary_knowledge_source SequenceFeatureRelationship : publications SequenceFeatureRelationship --|> publication : publications SequenceFeatureRelationship : qualifiers SequenceFeatureRelationship --|> ontology class : qualifiers SequenceFeatureRelationship : retrieval_source_ids SequenceFeatureRelationship --|> retrieval source : retrieval_source_ids SequenceFeatureRelationship : subject SequenceFeatureRelationship --|> nucleic acid entity : subject SequenceFeatureRelationship : subject_category SequenceFeatureRelationship --|> ontology class : subject_category SequenceFeatureRelationship : subject_category_closure SequenceFeatureRelationship --|> ontology class : subject_category_closure SequenceFeatureRelationship : subject_closure SequenceFeatureRelationship : subject_label_closure SequenceFeatureRelationship : subject_namespace SequenceFeatureRelationship : timepoint SequenceFeatureRelationship : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
NucleicAcidEntity		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
NucleicAcidEntity		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:SequenceFeatureRelationship
native biolink:SequenceFeatureRelationship
exact CHADO:feature_relationship

LinkML Source

Direct

name: sequence feature relationship
description: For example, a particular exon is part of a particular transcript or
  gene
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- CHADO:feature_relationship
is_a: association
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: nucleic acid entity
  object:
    name: object
    domain_of:
    - association
    range: nucleic acid entity
defining_slots:
- subject
- object