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Class: Snv

SNVs are single nucleotide positions in genomic DNA at which different sequence alternatives exist

URI: biolink:Snv

classDiagram class Snv SequenceVariant <|-- Snv Snv : category Snv : description Snv : full_name Snv : has_attribute Snv --|> attribute : has_attribute Snv : has_biological_sequence Snv : has_gene Snv --|> gene : has_gene Snv : id Snv : in_taxon Snv --|> organism taxon : in_taxon Snv : in_taxon_label Snv : iri Snv : name Snv : provided_by Snv : synonym Snv : type Snv : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_gene 0..*
Gene		 Each allele can be associated with any number of genes SequenceVariant
has_biological_sequence 0..1
BiologicalSequence		 The state of the sequence w GenomicEntity
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • single nucleotide variant
  • single nucleotide polymorphism
  • snp

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:Snv
native biolink:Snv
exact SO:0001483

LinkML Source

Direct

name: snv
description: SNVs are single nucleotide positions in genomic DNA at which different
  sequence alternatives exist
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- single nucleotide variant
- single nucleotide polymorphism
- snp
exact_mappings:
- SO:0001483
is_a: sequence variant