Class: ThingWithTaxon
A mixin that can be used on any entity that can be taxonomically classified. This includes individual organisms; genes, their products and other molecular entities; body parts; biological processes
classDiagram
class ThingWithTaxon
ThingWithTaxon <|-- BiologicalEntity
ThingWithTaxon <|-- NucleicAcidEntity
ThingWithTaxon <|-- GenomicBackgroundExposure
ThingWithTaxon : in_taxon
ThingWithTaxon --|> organism taxon : in_taxon
ThingWithTaxon : in_taxon_label
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| in_taxon | 0..* OrganismTaxon |
connects an entity to its taxonomic classification | direct |
| in_taxon_label | 0..1 LabelType |
The human readable scientific name for the taxon of the entity | direct |
Mixin Usage
| mixed into | description |
|---|---|
| BiologicalEntity | |
| NucleicAcidEntity | A nucleic acid entity is a molecular entity characterized by availability in ... |
| GenomicBackgroundExposure | A genomic background exposure is where an individual's specific genomic backg... |
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | biolink:ThingWithTaxon |
| native | biolink:ThingWithTaxon |
LinkML Source
Direct
name: thing with taxon
description: A mixin that can be used on any entity that can be taxonomically classified.
This includes individual organisms; genes, their products and other molecular entities;
body parts; biological processes
from_schema: https://w3id.org/biolink/biolink-model
mixin: true
slots:
- in taxon
- in taxon label