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Class: Transcript

An RNA synthesized on a DNA or RNA template by an RNA polymerase.

URI: biolink:Transcript

classDiagram class Transcript NucleicAcidEntity <|-- Transcript Transcript <|-- RNAProduct Transcript : available_from Transcript --|> DrugAvailabilityEnum : available_from Transcript : category Transcript : description Transcript : full_name Transcript : has_attribute Transcript --|> attribute : has_attribute Transcript : has_biological_sequence Transcript : has_chemical_role Transcript --|> chemical role : has_chemical_role Transcript : id Transcript : in_taxon Transcript --|> organism taxon : in_taxon Transcript : in_taxon_label Transcript : iri Transcript : is_metabolite Transcript : is_toxic Transcript : max_tolerated_dose Transcript : name Transcript : provided_by Transcript : synonym Transcript : trade_name Transcript --|> chemical entity : trade_name Transcript : type Transcript : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
is_metabolite 0..1
Boolean		 indicates whether a molecular entity is a metabolite MolecularEntity
trade_name 0..1
ChemicalEntity		 ChemicalEntity
available_from 0..*
DrugAvailabilityEnum		 ChemicalEntity
max_tolerated_dose 0..1
String		 The highest dose of a drug or treatment that does not cause unacceptable side... ChemicalEntity
is_toxic 0..1
Boolean		 ChemicalEntity
has_chemical_role 0..*
ChemicalRole		 A role is particular behaviour which a chemical entity may exhibit ChemicalEntity
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
TranscriptToGeneRelationship subject range Transcript
ExonToTranscriptRelationship object range Transcript

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • ENSEMBL

  • FB

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:Transcript
native biolink:Transcript
exact SO:0000673, SIO:010450, WIKIDATA:Q7243183, dcid:RNATranscript

LinkML Source

Direct

name: transcript
id_prefixes:
- ENSEMBL
- FB
description: An RNA synthesized on a DNA or RNA template by an RNA polymerase.
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- SO:0000673
- SIO:010450
- WIKIDATA:Q7243183
- dcid:RNATranscript
is_a: nucleic acid entity