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Class: TranscriptionFactorBindingSite

A region (or regions) of the genome that contains a region of DNA known or predicted to bind a protein that modulates gene transcription

URI: biolink:TranscriptionFactorBindingSite

classDiagram class TranscriptionFactorBindingSite GenomicEntity <|-- TranscriptionFactorBindingSite ChemicalEntityOrGeneOrGeneProduct <|-- TranscriptionFactorBindingSite PhysicalEssence <|-- TranscriptionFactorBindingSite OntologyClass <|-- TranscriptionFactorBindingSite RegulatoryRegion <|-- TranscriptionFactorBindingSite TranscriptionFactorBindingSite : category TranscriptionFactorBindingSite : description TranscriptionFactorBindingSite : full_name TranscriptionFactorBindingSite : has_attribute TranscriptionFactorBindingSite --|> attribute : has_attribute TranscriptionFactorBindingSite : has_biological_sequence TranscriptionFactorBindingSite : id TranscriptionFactorBindingSite : in_taxon TranscriptionFactorBindingSite --|> organism taxon : in_taxon TranscriptionFactorBindingSite : in_taxon_label TranscriptionFactorBindingSite : iri TranscriptionFactorBindingSite : name TranscriptionFactorBindingSite : provided_by TranscriptionFactorBindingSite : synonym TranscriptionFactorBindingSite : type TranscriptionFactorBindingSite : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • tf binding site
  • binding site

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:TranscriptionFactorBindingSite
native biolink:TranscriptionFactorBindingSite
exact SO:0000235

LinkML Source

Direct

name: transcription factor binding site
description: A region (or regions) of the genome that contains a region of DNA known
  or predicted to bind a protein that modulates gene transcription
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- tf binding site
- binding site
exact_mappings:
- SO:0000235
is_a: regulatory region
mixins:
- genomic entity
- chemical entity or gene or gene product
- physical essence
- ontology class