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Class: VariantAsAModelOfDiseaseAssociation

URI: biolink:VariantAsAModelOfDiseaseAssociation

classDiagram class VariantAsAModelOfDiseaseAssociation ModelToDiseaseAssociationMixin <|-- VariantAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- VariantAsAModelOfDiseaseAssociation VariantToDiseaseAssociation <|-- VariantAsAModelOfDiseaseAssociation VariantAsAModelOfDiseaseAssociation : aggregator_knowledge_source VariantAsAModelOfDiseaseAssociation : category VariantAsAModelOfDiseaseAssociation : description VariantAsAModelOfDiseaseAssociation : frequency_qualifier VariantAsAModelOfDiseaseAssociation : has_attribute VariantAsAModelOfDiseaseAssociation --|> attribute : has_attribute VariantAsAModelOfDiseaseAssociation : has_evidence VariantAsAModelOfDiseaseAssociation --|> evidence type : has_evidence VariantAsAModelOfDiseaseAssociation : id VariantAsAModelOfDiseaseAssociation : iri VariantAsAModelOfDiseaseAssociation : knowledge_source VariantAsAModelOfDiseaseAssociation : name VariantAsAModelOfDiseaseAssociation : negated VariantAsAModelOfDiseaseAssociation : object VariantAsAModelOfDiseaseAssociation --|> disease : object VariantAsAModelOfDiseaseAssociation : object_category VariantAsAModelOfDiseaseAssociation --|> ontology class : object_category VariantAsAModelOfDiseaseAssociation : object_category_closure VariantAsAModelOfDiseaseAssociation --|> ontology class : object_category_closure VariantAsAModelOfDiseaseAssociation : object_closure VariantAsAModelOfDiseaseAssociation : object_label_closure VariantAsAModelOfDiseaseAssociation : object_namespace VariantAsAModelOfDiseaseAssociation : onset_qualifier VariantAsAModelOfDiseaseAssociation --|> onset : onset_qualifier VariantAsAModelOfDiseaseAssociation : original_object VariantAsAModelOfDiseaseAssociation : original_predicate VariantAsAModelOfDiseaseAssociation : original_subject VariantAsAModelOfDiseaseAssociation : predicate VariantAsAModelOfDiseaseAssociation : primary_knowledge_source VariantAsAModelOfDiseaseAssociation : publications VariantAsAModelOfDiseaseAssociation --|> publication : publications VariantAsAModelOfDiseaseAssociation : qualifiers VariantAsAModelOfDiseaseAssociation --|> ontology class : qualifiers VariantAsAModelOfDiseaseAssociation : retrieval_source_ids VariantAsAModelOfDiseaseAssociation --|> retrieval source : retrieval_source_ids VariantAsAModelOfDiseaseAssociation : severity_qualifier VariantAsAModelOfDiseaseAssociation --|> severity value : severity_qualifier VariantAsAModelOfDiseaseAssociation : subject VariantAsAModelOfDiseaseAssociation --|> sequence variant : subject VariantAsAModelOfDiseaseAssociation : subject_category VariantAsAModelOfDiseaseAssociation --|> ontology class : subject_category VariantAsAModelOfDiseaseAssociation : subject_category_closure VariantAsAModelOfDiseaseAssociation --|> ontology class : subject_category_closure VariantAsAModelOfDiseaseAssociation : subject_closure VariantAsAModelOfDiseaseAssociation : subject_label_closure VariantAsAModelOfDiseaseAssociation : subject_namespace VariantAsAModelOfDiseaseAssociation : timepoint VariantAsAModelOfDiseaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
SequenceVariant		 A variant that has a role in modeling the disease Association
predicate 1..1
PredicateType		 The relationship to the disease Association
object 1..1
Disease		 disease Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
severity_qualifier 0..1
SeverityValue		 a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset		 a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue		 a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:VariantAsAModelOfDiseaseAssociation
native biolink:VariantAsAModelOfDiseaseAssociation

LinkML Source

Direct

name: variant as a model of disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: variant to disease association
mixins:
- model to disease association mixin
- entity to disease association mixin
slot_usage:
  subject:
    name: subject
    description: A variant that has a role in modeling the disease.
    domain_of:
    - association
    range: sequence variant
defining_slots:
- subject
- predicate
- object