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Class: VariantToEntityAssociationMixin

URI: biolink:VariantToEntityAssociationMixin

classDiagram class VariantToEntityAssociationMixin VariantToEntityAssociationMixin <|-- VariantToGeneAssociation VariantToEntityAssociationMixin <|-- VariantToPopulationAssociation VariantToEntityAssociationMixin <|-- VariantToPhenotypicFeatureAssociation VariantToEntityAssociationMixin <|-- VariantToDiseaseAssociation

Slots

Name Cardinality and Range Description Inheritance

Mixin Usage

mixed into description
VariantToGeneAssociation An association between a variant and a gene, where the variant has a genetic ...
VariantToPopulationAssociation An association between a variant and a population, where the variant has part...
VariantToPhenotypicFeatureAssociation
VariantToDiseaseAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:VariantToEntityAssociationMixin
native biolink:VariantToEntityAssociationMixin

LinkML Source

Direct

name: variant to entity association mixin
local_names:
  ga4gh:
    local_name_source: ga4gh
    local_name_value: variant annotation
from_schema: https://w3id.org/biolink/biolink-model
mixin: true
slot_usage:
  subject:
    name: subject
    description: a sequence variant in which the allele state is associated with some
      other entity
    examples:
    - value: CLINVAR:38077
      description: CLINVAR representation of NM_000059.3(BRCA2):c.7007G>A (p.Arg2336His)
    - value: ClinGen:CA024716
      description: chr13:g.32921033G>C (hg19) in ClinGen
    domain_of:
    - association
    range: sequence variant
defining_slots:
- subject