Class: VariantToPopulationAssociation

classDiagram class VariantToPopulationAssociation VariantToEntityAssociationMixin <|-- VariantToPopulationAssociation FrequencyQuantifier <|-- VariantToPopulationAssociation FrequencyQualifierMixin <|-- VariantToPopulationAssociation Association <|-- VariantToPopulationAssociation VariantToPopulationAssociation : aggregator_knowledge_source VariantToPopulationAssociation : category VariantToPopulationAssociation : description VariantToPopulationAssociation : frequency_qualifier VariantToPopulationAssociation : has_attribute VariantToPopulationAssociation --|> attribute : has_attribute VariantToPopulationAssociation : has_count VariantToPopulationAssociation : has_evidence VariantToPopulationAssociation --|> evidence type : has_evidence VariantToPopulationAssociation : has_percentage VariantToPopulationAssociation : has_quotient VariantToPopulationAssociation : has_total VariantToPopulationAssociation : id VariantToPopulationAssociation : iri VariantToPopulationAssociation : knowledge_source VariantToPopulationAssociation : name VariantToPopulationAssociation : negated VariantToPopulationAssociation : object VariantToPopulationAssociation --|> population of individual organisms : object VariantToPopulationAssociation : object_category VariantToPopulationAssociation --|> ontology class : object_category VariantToPopulationAssociation : object_category_closure VariantToPopulationAssociation --|> ontology class : object_category_closure VariantToPopulationAssociation : object_closure VariantToPopulationAssociation : object_label_closure VariantToPopulationAssociation : object_namespace VariantToPopulationAssociation : original_object VariantToPopulationAssociation : original_predicate VariantToPopulationAssociation : original_subject VariantToPopulationAssociation : predicate VariantToPopulationAssociation : primary_knowledge_source VariantToPopulationAssociation : publications VariantToPopulationAssociation --|> publication : publications VariantToPopulationAssociation : qualifiers VariantToPopulationAssociation --|> ontology class : qualifiers VariantToPopulationAssociation : retrieval_source_ids VariantToPopulationAssociation --|> retrieval source : retrieval_source_ids VariantToPopulationAssociation : subject VariantToPopulationAssociation --|> sequence variant : subject VariantToPopulationAssociation : subject_category VariantToPopulationAssociation --|> ontology class : subject_category VariantToPopulationAssociation : subject_category_closure VariantToPopulationAssociation --|> ontology class : subject_category_closure VariantToPopulationAssociation : subject_closure VariantToPopulationAssociation : subject_label_closure VariantToPopulationAssociation : subject_namespace VariantToPopulationAssociation : timepoint VariantToPopulationAssociation : type

name: variant to population association
description: An association between a variant and a population, where the variant
  has particular frequency in the population
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
mixins:
- variant to entity association mixin
- frequency quantifier
- frequency qualifier mixin
slot_usage:
  subject:
    name: subject
    description: an allele that has a certain frequency in a given population
    examples:
    - value: NC_000017.11:g.43051071A>T
      description: 17:41203088 A/C in gnomad
    domain_of:
    - association
    range: sequence variant
  object:
    name: object
    description: the population that is observed to have the frequency
    examples:
    - value: HANCESTRO:0010
      description: African
    domain_of:
    - association
    range: population of individual organisms
  has quotient:
    name: has quotient
    description: frequency of allele in population, expressed as a number with allele
      divided by number in reference population, aka allele frequency
    examples:
    - value: '0.0001666'
    domain_of:
    - frequency quantifier
  has count:
    name: has count
    description: number in object population that carry a particular allele, aka allele
      count
    examples:
    - value: '4'
      description: 4 individuals in gnomad set
    domain_of:
    - frequency quantifier
  has total:
    name: has total
    description: number all populations that carry a particular allele, aka allele
      number
    examples:
    - value: '24014'
      description: 24014 individuals in gnomad set
    domain_of:
    - frequency quantifier
defining_slots:
- subject
- object