Slot: aspect_qualifier

Composes with the core concept to describe new concepts of a different ontological type. e.g. a process in which the core concept participates, a function/activity/role held by the core concept, or a characteristic/quality that inheres in the core concept. The purpose of the aspect slot is to indicate what aspect is being affected in an 'affects' association.

URI: biolink:aspect_qualifier

Inheritance

• association_slot
  • qualifier
    • aspect_qualifier
      • subject_aspect_qualifier
      • object_aspect_qualifier

Properties

• Range: String

Examples

Value
stability
abundance
expression
exposure

Identifier and Mapping Information

Schema Source

• from schema: https://w3id.org/biolink/biolink-model

LinkML Source

name: aspect qualifier
description: Composes with the core concept to describe new concepts of a different
  ontological type. e.g. a process in which the core concept participates, a function/activity/role
  held by the core concept, or a characteristic/quality that inheres in the core concept.  The
  purpose of the aspect slot is to indicate what aspect is being affected in an  'affects'
  association.
notes:
- for good examples of aspects in the gene-> chemical space, please see the  GeneOrGeneProductOrChemicalEntityAspectEnum
  (below) which lists many aspects that can be used to qualify  the gene making the
  full subject a different ontological type.   the qualifier ‘expression’ combines
  with a core concept of ‘Gene X’ to express the composed concept ‘expression of Gene
  X’ (Gene → Biological Process) the qualifier ‘exposure’ combines with a core concept
  of ‘Chemical X’ to express the composed concept ‘exposure to Chemical X’ (Chemical
  → Exposure Process) the qualifier ‘activity’ combines with a core concept of ‘PPARG’
  to express the concept ‘activity of PPARG’ (Gene → function/activity) the qualifier
  ‘emergency Department Visit’ combines with a core concept of ‘Disease X’ to express
  the concept ‘Emergency Department visits for Disease X’ (Disease → Clinical Event)
  the qualifier ‘infection’ combines with a core concept of ‘Giardia’ to express the
  concept ‘Infection with Giardia’ (Taxon → Biological / Pathological Process) the
  qualifier ‘severity’ combines with a core concept of ‘DILI’ to express the concept
  ‘the severity level of DILI’ (Disease → (intrinsic) Characteristic/Quality) the
  qualifier ‘abundance’ combines with a core concept of ‘BRCA2’ to express the concept
  ‘abundance of BRCA2’ (Gene → (extrinsic) characteristic/quality)
examples:
- value: stability
- value: abundance
- value: expression
- value: exposure
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
is_a: qualifier
abstract: true
domain: association
alias: aspect_qualifier
range: string