Slot: has_biological_sequence
connects a genomic feature to its sequence
URI: biolink:has_biological_sequence
Inheritance
- node_property
- has_biological_sequence
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| GenomicEntity | no | |
| EpigenomicEntity | no | |
| NucleicAcidEntity | A nucleic acid entity is a molecular entity characterized by availability in ... | no |
| RegulatoryRegion | A region (or regions) of the genome that contains known or putative regulator... | no |
| AccessibleDnaRegion | A region (or regions) of a chromatinized genome that has been measured to be ... | no |
| TranscriptionFactorBindingSite | A region (or regions) of the genome that contains a region of DNA known or pr... | no |
| Gene | A region (or regions) that includes all of the sequence elements necessary to... | no |
| NucleosomeModification | A chemical modification of a histone protein within a nucleosome octomer or a... | no |
| Genome | A genome is the sum of genetic material within a cell or virion | no |
| Exon | A region of the transcript sequence within a gene which is not removed from t... | no |
| Transcript | An RNA synthesized on a DNA or RNA template by an RNA polymerase | no |
| CodingSequence | no | |
| RNAProduct | no | |
| RNAProductIsoform | Represents a protein that is a specific isoform of the canonical or reference... | no |
| NoncodingRNAProduct | no | |
| MicroRNA | no | |
| SiRNA | A small RNA molecule that is the product of a longer exogenous or endogenous ... | no |
| Genotype | An information content entity that describes a genome by specifying the total... | no |
| Haplotype | A set of zero or more Alleles on a single instance of a Sequence[VMC] | no |
| SequenceVariant | A sequence_variant is a non exact copy of a sequence_feature or genome exhibi... | yes |
| Snv | SNVs are single nucleotide positions in genomic DNA at which different sequen... | no |
| ReagentTargetedGene | A gene altered in its expression level in the context of some experiment as a... | no |
| GenomicBackgroundExposure | A genomic background exposure is where an individual's specific genomic backg... | no |
Properties
- Range: BiologicalSequence
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
LinkML Source
name: has biological sequence
description: connects a genomic feature to its sequence
from_schema: https://w3id.org/biolink/biolink-model
is_a: node property
domain: named thing
alias: has_biological_sequence
domain_of:
- genomic entity
- epigenomic entity
range: biological sequence