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Slot: name

A human-readable name for an attribute or entity.

URI: rdfs:label

Applicable Classes

Name Description Modifies Slot
Attribute A property or characteristic of an entity yes
Entity Root Biolink Model class for all things and informational relationships, real... no
MacromolecularMachineMixin A union of gene locus, gene product, and macromolecular complex yes
ChemicalRole A role played by the molecular entity or part thereof within a chemical cont... no
BiologicalSex no
PhenotypicSex An attribute corresponding to the phenotypic sex of the individual, based upo... no
GenotypicSex An attribute corresponding to the genotypic sex of the individual, based upon... no
SeverityValue describes the severity of a phenotypic feature or disease no
NamedThing a databased entity or concept/class no
OrganismTaxon A classification of a set of organisms no
Event Something that happens at a given place and time no
AdministrativeEntity no
StudyResult A collection of data items from a study that are about a particular study sub... no
Study a detailed investigation and/or analysis no
StudyVariable a variable that is used as a measure in the investigation of a study no
CommonDataElement A Common Data Element (CDE) is a standardized, precisely defined question, pa... no
ConceptCountAnalysisResult A result of a concept count analysis no
ObservedExpectedFrequencyAnalysisResult A result of a observed expected frequency analysis no
RelativeFrequencyAnalysisResult A result of a relative frequency analysis no
TextMiningResult A result of text mining no
ChiSquaredAnalysisResult A result of a chi squared analysis no
LogOddsAnalysisResult A result of a log odds ratio analysis no
Agent person, group, organization or project that provides a piece of information (... yes
InformationContentEntity a piece of information that typically describes some topic of discourse or is... no
Dataset an item that refers to a collection of data from a data source no
DatasetDistribution an item that holds distribution level information about a dataset no
DatasetVersion an item that holds version level information about a dataset no
DatasetSummary an item that holds summary level information about a dataset no
ConfidenceLevel Level of confidence in a statement no
EvidenceType Class of evidence that supports an association no
Publication Any ‘published’ piece of information yes
Book This class may rarely be instantiated except if use cases of a given knowledg... no
BookChapter no
Serial This class may rarely be instantiated except if use cases of a given knowledg... no
Article a piece of writing on a particular topic presented as a stand-alone section ... no
JournalArticle an article, typically presenting results of research, that is published in a... no
Patent a legal document granted by a patent issuing authority which confers upon th... no
WebPage a document that is published according to World Wide Web standards, which ma... no
PreprintPublication a document reresenting an early version of an author's original scholarly wor... no
DrugLabel a document accompanying a drug or its container that provides written, printe... no
RetrievalSource Provides information about how a particular InformationResource served as a s... no
PhysicalEntity An entity that has material reality (a no
Activity An activity is something that occurs over a period of time and acts upon or w... no
Procedure A series of actions conducted in a certain order or manner no
Phenomenon a fact or situation that is observed to exist or happen, especially one whose... no
Device A thing made or adapted for a particular purpose, especially a piece of mecha... no
DiagnosticAid A device or substance used to help diagnose disease or injury no
StudyPopulation A group of people banded together or treated as a group as participants in a ... no
MaterialSample A sample is a limited quantity of something (e no
PlanetaryEntity Any entity or process that exists at the level of the whole planet no
EnvironmentalProcess no
EnvironmentalFeature no
GeographicLocation a location that can be described in lat/long coordinates no
GeographicLocationAtTime a location that can be described in lat/long coordinates, for a particular ti... no
BiologicalEntity no
MolecularEntity A molecular entity is a chemical entity composed of individual or covalently ... no
ChemicalEntity A chemical entity is a physical entity that pertains to chemistry or biochemi... no
SmallMolecule A small molecule entity is a molecular entity characterized by availability i... no
ChemicalMixture A chemical mixture is a chemical entity composed of two or more molecular ent... no
NucleicAcidEntity A nucleic acid entity is a molecular entity characterized by availability in ... no
RegulatoryRegion A region (or regions) of the genome that contains known or putative regulator... no
AccessibleDnaRegion A region (or regions) of a chromatinized genome that has been measured to be ... no
TranscriptionFactorBindingSite A region (or regions) of the genome that contains a region of DNA known or pr... no
MolecularMixture A molecular mixture is a chemical mixture composed of two or more molecular e... no
ComplexMolecularMixture A complex molecular mixture is a chemical mixture composed of two or more mol... no
BiologicalProcessOrActivity Either an individual molecular activity, or a collection of causally connecte... no
MolecularActivity An execution of a molecular function carried out by a gene product or macromo... no
BiologicalProcess One or more causally connected executions of molecular functions no
Pathway no
PhysiologicalProcess no
Behavior no
ProcessedMaterial A chemical entity (often a mixture) processed for consumption for nutritional... no
Drug A substance intended for use in the diagnosis, cure, mitigation, treatment, o... no
EnvironmentalFoodContaminant no
FoodAdditive no
Food A substance consumed by a living organism as a source of nutrition no
OrganismAttribute describes a characteristic of an organismal entity no
PhenotypicQuality A property of a phenotype no
GeneticInheritance The pattern or 'mode' in which a particular genetic trait or disorder is pass... no
OrganismalEntity A named entity that is either a part of an organism, a whole organism, popula... no
Bacterium A member of a group of unicellular microorganisms lacking a nuclear membrane,... no
Virus A virus is a microorganism that replicates itself as a microRNA and infects t... no
CellularOrganism no
Mammal A member of the class Mammalia, a clade of endothermic amniotes distinguished... no
Human A member of the the species Homo sapiens no
Plant no
Invertebrate An animal lacking a vertebral column no
Vertebrate A sub-phylum of animals consisting of those having a bony or cartilaginous ve... no
Fungus A kingdom of eukaryotic, heterotrophic organisms that live as saprobes or par... no
LifeStage A stage of development or growth of an organism, including post-natal adult s... no
IndividualOrganism An instance of an organism no
PopulationOfIndividualOrganisms A collection of individuals from the same taxonomic class distinguished by on... no
DiseaseOrPhenotypicFeature Either one of a disease or an individual phenotypic feature no
Disease A disorder of structure or function, especially one that produces specific s... no
PhenotypicFeature A combination of entity and quality that makes up a phenotyping statement no
BehavioralFeature A phenotypic feature which is behavioral in nature no
AnatomicalEntity A subcellular location, cell type or gross anatomical part no
CellularComponent A location in or around a cell no
Cell no
CellLine no
GrossAnatomicalStructure no
GeneOrGeneProduct A union of gene loci or gene products no
Gene A region (or regions) that includes all of the sequence elements necessary to... no
GeneProductMixin The functional molecular product of a single gene locus no
GeneProductIsoformMixin This is an abstract class that can be mixed in with different kinds of gene p... no
MacromolecularComplex A stable assembly of two or more macromolecules, i no
NucleosomeModification A chemical modification of a histone protein within a nucleosome octomer or a... no
Genome A genome is the sum of genetic material within a cell or virion no
Exon A region of the transcript sequence within a gene which is not removed from t... no
Transcript An RNA synthesized on a DNA or RNA template by an RNA polymerase no
CodingSequence no
Polypeptide A polypeptide is a molecular entity characterized by availability in protein ... no
Protein A gene product that is composed of a chain of amino acid sequences and is pro... no
ProteinIsoform Represents a protein that is a specific isoform of the canonical or reference... no
ProteinDomain A conserved part of protein sequence and (tertiary) structure that can evolve... no
PosttranslationalModification A chemical modification of a polypeptide or protein that occurs after transla... no
ProteinFamily no
NucleicAcidSequenceMotif A linear nucleotide sequence pattern that is widespread and has, or is conjec... no
RNAProduct no
RNAProductIsoform Represents a protein that is a specific isoform of the canonical or reference... no
NoncodingRNAProduct no
MicroRNA no
SiRNA A small RNA molecule that is the product of a longer exogenous or endogenous ... no
GeneFamily any grouping of multiple genes or gene products related by common descent no
Zygosity no
Genotype An information content entity that describes a genome by specifying the total... no
Haplotype A set of zero or more Alleles on a single instance of a Sequence[VMC] no
SequenceVariant A sequence_variant is a non exact copy of a sequence_feature or genome exhibi... no
Snv SNVs are single nucleotide positions in genomic DNA at which different sequen... no
ReagentTargetedGene A gene altered in its expression level in the context of some experiment as a... no
ClinicalAttribute Attributes relating to a clinical manifestation no
ClinicalMeasurement A clinical measurement is a special kind of attribute which results from a la... no
ClinicalModifier Used to characterize and specify the phenotypic abnormalities defined in the ... no
ClinicalCourse The course a disease typically takes from its onset, progression in time, and... no
Onset The age group in which (disease) symptom manifestations appear no
ClinicalEntity Any entity or process that exists in the clinical domain and outside the biol... no
ClinicalTrial no
ClinicalIntervention no
ClinicalFinding this category is currently considered broad enough to tag clinical lab measur... no
Hospitalization no
SocioeconomicAttribute Attributes relating to a socioeconomic manifestation no
Case An individual (human) organism that has a patient role in some clinical conte... no
Cohort A group of people banded together or treated as a group who share common char... no
GenomicBackgroundExposure A genomic background exposure is where an individual's specific genomic backg... no
PathologicalProcess A biologic function or a process having an abnormal or deleterious effect at ... no
PathologicalProcessExposure A pathological process, when viewed as an exposure, representing a preconditi... no
PathologicalAnatomicalStructure An anatomical structure with the potential of have an abnormal or deleterious... no
PathologicalAnatomicalExposure An abnormal anatomical structure, when viewed as an exposure, representing an... no
DiseaseOrPhenotypicFeatureExposure A disease or phenotypic feature state, when viewed as an exposure, represents... no
ChemicalExposure A chemical exposure is an intake of a particular chemical entity no
ComplexChemicalExposure A complex chemical exposure is an intake of a chemical mixture (e no
DrugExposure A drug exposure is an intake of a particular drug no
DrugToGeneInteractionExposure drug to gene interaction exposure is a drug exposure is where the interaction... no
Treatment A treatment is targeted at a disease or phenotype and may involve multiple dr... no
BioticExposure An external biotic exposure is an intake of (sometimes pathological) biologic... no
GeographicExposure A geographic exposure is a factor relating to geographic proximity to some im... no
EnvironmentalExposure A environmental exposure is a factor relating to abiotic processes in the env... no
BehavioralExposure A behavioral exposure is a factor relating to behavior impacting an individua... no
SocioeconomicExposure A socioeconomic exposure is a factor relating to social and financial status ... no
Association A typed association between two entities, supported by evidence no
ChemicalEntityAssessesNamedThingAssociation no
ContributorAssociation Any association between an entity (such as a publication) and various agents ... no
GenotypeToGenotypePartAssociation Any association between one genotype and a genotypic entity that is a sub-com... no
GenotypeToGeneAssociation Any association between a genotype and a gene no
GenotypeToVariantAssociation Any association between a genotype and a sequence variant no
GeneToGeneAssociation abstract parent class for different kinds of gene-gene or gene product to gen... no
GeneToGeneHomologyAssociation A homology association between two genes no
GeneToGeneFamilyAssociation Set membership of a gene in a family of genes related by common evolutionary ... no
GeneToGeneCoexpressionAssociation Indicates that two genes are co-expressed, generally under the same condition... no
PairwiseGeneToGeneInteraction An interaction between two genes or two gene products no
PairwiseMolecularInteraction An interaction at the molecular level between two physical entities no
CellLineToDiseaseOrPhenotypicFeatureAssociation An relationship between a cell line and a disease or a phenotype, where the c... no
ChemicalToChemicalAssociation A relationship between two chemical entities no
ReactionToParticipantAssociation no
ReactionToCatalystAssociation no
ChemicalToChemicalDerivationAssociation A causal relationship between two chemical entities, where the subject repres... no
ChemicalToDiseaseOrPhenotypicFeatureAssociation An interaction between a chemical entity and a phenotype or disease, where th... no
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation This association defines a relationship between a chemical or treatment (or p... no
ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation This association defines a relationship between a chemical or treatment (or p... no
GeneToPathwayAssociation An interaction between a gene or gene product and a biological process or pat... no
MolecularActivityToPathwayAssociation Association that holds the relationship between a reaction and the pathway it... no
ChemicalToPathwayAssociation An interaction between a chemical entity and a biological process or pathway no
NamedThingAssociatedWithLikelihoodOfNamedThingAssociation no
ChemicalGeneInteractionAssociation describes a physical interaction between a chemical entity and a gene or gene... no
ChemicalAffectsGeneAssociation Describes an effect that a chemical has on a gene or gene product (e no
GeneAffectsChemicalAssociation Describes an effect that a gene or gene product has on a chemical entity (e no
DrugToGeneAssociation An interaction between a drug and a gene or gene product no
MaterialSampleDerivationAssociation An association between a material sample and the material entity from which i... no
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation An association between a material sample and a disease or phenotype no
DiseaseToExposureEventAssociation An association between an exposure event and a disease no
ExposureEventToOutcomeAssociation An association between an exposure event and an outcome no
InformationContentEntityToNamedThingAssociation association between a named thing and a information content entity where the ... no
DiseaseOrPhenotypicFeatureToLocationAssociation An association between either a disease or a phenotypic feature and an anatom... no
DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation An association between either a disease or a phenotypic feature and its mode ... no
GenotypeToPhenotypicFeatureAssociation Any association between one genotype and a phenotypic feature, where having t... no
ExposureEventToPhenotypicFeatureAssociation Any association between an environment and a phenotypic feature, where being ... no
DiseaseToPhenotypicFeatureAssociation An association between a disease and a phenotypic feature in which the phenot... no
CaseToPhenotypicFeatureAssociation An association between a case (e no
BehaviorToBehavioralFeatureAssociation An association between an mixture behavior and a behavioral feature manifeste... no
GeneToDiseaseOrPhenotypicFeatureAssociation no
GeneToPhenotypicFeatureAssociation no
GeneToDiseaseAssociation no
CausalGeneToDiseaseAssociation no
CorrelatedGeneToDiseaseAssociation no
DruggableGeneToDiseaseAssociation no
VariantToGeneAssociation An association between a variant and a gene, where the variant has a genetic ... no
VariantToGeneExpressionAssociation An association between a variant and expression of a gene (i no
VariantToPopulationAssociation An association between a variant and a population, where the variant has part... no
PopulationToPopulationAssociation An association between a two populations no
VariantToPhenotypicFeatureAssociation no
VariantToDiseaseAssociation no
GenotypeToDiseaseAssociation no
GeneAsAModelOfDiseaseAssociation no
VariantAsAModelOfDiseaseAssociation no
GenotypeAsAModelOfDiseaseAssociation no
CellLineAsAModelOfDiseaseAssociation no
OrganismalEntityAsAModelOfDiseaseAssociation no
OrganismToOrganismAssociation no
TaxonToTaxonAssociation no
GeneHasVariantThatContributesToDiseaseAssociation no
GeneToExpressionSiteAssociation An association between a gene and a gene expression site, possibly qualified ... no
SequenceVariantModulatesTreatmentAssociation An association between a sequence variant and a treatment or health intervent... no
FunctionalAssociation An association between a macromolecular machine mixin (gene, gene product or ... no
MacromolecularMachineToMolecularActivityAssociation A functional association between a macromolecular machine (gene, gene product... no
MacromolecularMachineToBiologicalProcessAssociation A functional association between a macromolecular machine (gene, gene product... no
MacromolecularMachineToCellularComponentAssociation A functional association between a macromolecular machine (gene, gene product... no
MolecularActivityToChemicalEntityAssociation Added in response to capturing relationship between microbiome activities as ... no
MolecularActivityToMolecularActivityAssociation Added in response to capturing relationship between microbiome activities as ... no
GeneToGoTermAssociation no
EntityToDiseaseAssociation no
EntityToPhenotypicFeatureAssociation no
SequenceAssociation An association between a sequence feature and a nucleic acid entity it is loc... no
GenomicSequenceLocalization A relationship between a sequence feature and a nucleic acid entity it is loc... no
SequenceFeatureRelationship For example, a particular exon is part of a particular transcript or gene no
TranscriptToGeneRelationship A gene is a collection of transcripts no
GeneToGeneProductRelationship A gene is transcribed and potentially translated to a gene product no
ExonToTranscriptRelationship A transcript is formed from multiple exons no
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation A regulatory relationship between two genes no
AnatomicalEntityToAnatomicalEntityAssociation no
AnatomicalEntityToAnatomicalEntityPartOfAssociation A relationship between two anatomical entities where the relationship is mere... no
AnatomicalEntityToAnatomicalEntityOntogenicAssociation A relationship between two anatomical entities where the relationship is onto... no
OrganismTaxonToOrganismTaxonAssociation A relationship between two organism taxon nodes no
OrganismTaxonToOrganismTaxonSpecialization A child-parent relationship between two taxa no
OrganismTaxonToOrganismTaxonInteraction An interaction relationship between two taxa no
OrganismTaxonToEnvironmentAssociation no

Properties

Aliases

  • label
  • display name
  • title

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

LinkML Source

name: name
description: A human-readable name for an attribute or entity.
in_subset:
- translator_minimal
- samples
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- label
- display name
- title
exact_mappings:
- gff3:Name
- gpi:DB_Object_Name
narrow_mappings:
- dct:title
- WIKIDATA_PROPERTY:P1476
domain: entity
slot_uri: rdfs:label
alias: name
domain_of:
- attribute
- entity
- macromolecular machine mixin
range: label type