Slot: object_closure
Used to hold the object closure of an association. This is a denormalized field used primarily in the SQL serialization of a knowledge graph via KGX.
Inheritance
- association_slot
- object_closure
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Association | A typed association between two entities, supported by evidence | no |
| ChemicalEntityAssessesNamedThingAssociation | no | |
| ContributorAssociation | Any association between an entity (such as a publication) and various agents ... | no |
| GenotypeToGenotypePartAssociation | Any association between one genotype and a genotypic entity that is a sub-com... | no |
| GenotypeToGeneAssociation | Any association between a genotype and a gene | no |
| GenotypeToVariantAssociation | Any association between a genotype and a sequence variant | no |
| GeneToGeneAssociation | abstract parent class for different kinds of gene-gene or gene product to gen... | no |
| GeneToGeneHomologyAssociation | A homology association between two genes | no |
| GeneToGeneFamilyAssociation | Set membership of a gene in a family of genes related by common evolutionary ... | no |
| GeneToGeneCoexpressionAssociation | Indicates that two genes are co-expressed, generally under the same condition... | no |
| PairwiseGeneToGeneInteraction | An interaction between two genes or two gene products | no |
| PairwiseMolecularInteraction | An interaction at the molecular level between two physical entities | no |
| CellLineToDiseaseOrPhenotypicFeatureAssociation | An relationship between a cell line and a disease or a phenotype, where the c... | no |
| ChemicalToChemicalAssociation | A relationship between two chemical entities | no |
| ReactionToParticipantAssociation | no | |
| ReactionToCatalystAssociation | no | |
| ChemicalToChemicalDerivationAssociation | A causal relationship between two chemical entities, where the subject repres... | no |
| ChemicalToDiseaseOrPhenotypicFeatureAssociation | An interaction between a chemical entity and a phenotype or disease, where th... | no |
| ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation | This association defines a relationship between a chemical or treatment (or p... | no |
| ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation | This association defines a relationship between a chemical or treatment (or p... | no |
| GeneToPathwayAssociation | An interaction between a gene or gene product and a biological process or pat... | no |
| MolecularActivityToPathwayAssociation | Association that holds the relationship between a reaction and the pathway it... | no |
| ChemicalToPathwayAssociation | An interaction between a chemical entity and a biological process or pathway | no |
| NamedThingAssociatedWithLikelihoodOfNamedThingAssociation | no | |
| ChemicalGeneInteractionAssociation | describes a physical interaction between a chemical entity and a gene or gene... | no |
| ChemicalAffectsGeneAssociation | Describes an effect that a chemical has on a gene or gene product (e | no |
| GeneAffectsChemicalAssociation | Describes an effect that a gene or gene product has on a chemical entity (e | no |
| DrugToGeneAssociation | An interaction between a drug and a gene or gene product | no |
| MaterialSampleDerivationAssociation | An association between a material sample and the material entity from which i... | no |
| MaterialSampleToDiseaseOrPhenotypicFeatureAssociation | An association between a material sample and a disease or phenotype | no |
| DiseaseToExposureEventAssociation | An association between an exposure event and a disease | no |
| ExposureEventToOutcomeAssociation | An association between an exposure event and an outcome | no |
| InformationContentEntityToNamedThingAssociation | association between a named thing and a information content entity where the ... | no |
| DiseaseOrPhenotypicFeatureToLocationAssociation | An association between either a disease or a phenotypic feature and an anatom... | no |
| DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation | An association between either a disease or a phenotypic feature and its mode ... | no |
| GenotypeToPhenotypicFeatureAssociation | Any association between one genotype and a phenotypic feature, where having t... | no |
| ExposureEventToPhenotypicFeatureAssociation | Any association between an environment and a phenotypic feature, where being ... | no |
| DiseaseToPhenotypicFeatureAssociation | An association between a disease and a phenotypic feature in which the phenot... | no |
| CaseToPhenotypicFeatureAssociation | An association between a case (e | no |
| BehaviorToBehavioralFeatureAssociation | An association between an mixture behavior and a behavioral feature manifeste... | no |
| GeneToDiseaseOrPhenotypicFeatureAssociation | no | |
| GeneToPhenotypicFeatureAssociation | no | |
| GeneToDiseaseAssociation | no | |
| CausalGeneToDiseaseAssociation | no | |
| CorrelatedGeneToDiseaseAssociation | no | |
| DruggableGeneToDiseaseAssociation | no | |
| VariantToGeneAssociation | An association between a variant and a gene, where the variant has a genetic ... | no |
| VariantToGeneExpressionAssociation | An association between a variant and expression of a gene (i | no |
| VariantToPopulationAssociation | An association between a variant and a population, where the variant has part... | no |
| PopulationToPopulationAssociation | An association between a two populations | no |
| VariantToPhenotypicFeatureAssociation | no | |
| VariantToDiseaseAssociation | no | |
| GenotypeToDiseaseAssociation | no | |
| GeneAsAModelOfDiseaseAssociation | no | |
| VariantAsAModelOfDiseaseAssociation | no | |
| GenotypeAsAModelOfDiseaseAssociation | no | |
| CellLineAsAModelOfDiseaseAssociation | no | |
| OrganismalEntityAsAModelOfDiseaseAssociation | no | |
| OrganismToOrganismAssociation | no | |
| TaxonToTaxonAssociation | no | |
| GeneHasVariantThatContributesToDiseaseAssociation | no | |
| GeneToExpressionSiteAssociation | An association between a gene and a gene expression site, possibly qualified ... | no |
| SequenceVariantModulatesTreatmentAssociation | An association between a sequence variant and a treatment or health intervent... | no |
| FunctionalAssociation | An association between a macromolecular machine mixin (gene, gene product or ... | no |
| MacromolecularMachineToMolecularActivityAssociation | A functional association between a macromolecular machine (gene, gene product... | no |
| MacromolecularMachineToBiologicalProcessAssociation | A functional association between a macromolecular machine (gene, gene product... | no |
| MacromolecularMachineToCellularComponentAssociation | A functional association between a macromolecular machine (gene, gene product... | no |
| MolecularActivityToChemicalEntityAssociation | Added in response to capturing relationship between microbiome activities as ... | no |
| MolecularActivityToMolecularActivityAssociation | Added in response to capturing relationship between microbiome activities as ... | no |
| GeneToGoTermAssociation | no | |
| EntityToDiseaseAssociation | no | |
| EntityToPhenotypicFeatureAssociation | no | |
| SequenceAssociation | An association between a sequence feature and a nucleic acid entity it is loc... | no |
| GenomicSequenceLocalization | A relationship between a sequence feature and a nucleic acid entity it is loc... | no |
| SequenceFeatureRelationship | For example, a particular exon is part of a particular transcript or gene | no |
| TranscriptToGeneRelationship | A gene is a collection of transcripts | no |
| GeneToGeneProductRelationship | A gene is transcribed and potentially translated to a gene product | no |
| ExonToTranscriptRelationship | A transcript is formed from multiple exons | no |
| ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation | A regulatory relationship between two genes | no |
| AnatomicalEntityToAnatomicalEntityAssociation | no | |
| AnatomicalEntityToAnatomicalEntityPartOfAssociation | A relationship between two anatomical entities where the relationship is mere... | no |
| AnatomicalEntityToAnatomicalEntityOntogenicAssociation | A relationship between two anatomical entities where the relationship is onto... | no |
| OrganismTaxonToOrganismTaxonAssociation | A relationship between two organism taxon nodes | no |
| OrganismTaxonToOrganismTaxonSpecialization | A child-parent relationship between two taxa | no |
| OrganismTaxonToOrganismTaxonInteraction | An interaction relationship between two taxa | no |
| OrganismTaxonToEnvironmentAssociation | no |
Properties
-
Range: String
-
Multivalued: True
Examples
| Value |
|---|
| ['MONDO:0000167', 'MONDO:0005395'] |
Identifier and Mapping Information
Annotations
| property | value |
|---|---|
| denormalized | True |
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
LinkML Source
name: object closure
annotations:
denormalized:
tag: denormalized
value: true
description: Used to hold the object closure of an association. This is a denormalized field
used primarily in the SQL serialization of a knowledge graph via KGX.
examples:
- value: '[''MONDO:0000167'', ''MONDO:0005395'']'
description: 'The object closure of the association between the gene ''BRCA1'' and
the disease ''breast cancer'' is the set of all diseases that are ancestors of
''breast cancer'' in the MONDO ontology. Note: typically the "subclass of" and
"part of" relations are used to construct the closure, but other relations may
be used as well.'
from_schema: https://w3id.org/biolink/biolink-model
is_a: association slot
domain: association
multivalued: true
alias: object_closure
domain_of:
- association
range: string