Slot: subject_namespace

Used to hold the subject namespace of an association. This is a denormalized field used primarily in the SQL serialization of a knowledge graph via KGX.

URI: biolink:subject_namespace

Inheritance

association_slot
- subject_namespace

Applicable Classes

Name	Description	Modifies Slot
Association	A typed association between two entities, supported by evidence	no
ChemicalEntityAssessesNamedThingAssociation		no
ContributorAssociation	Any association between an entity (such as a publication) and various agents ...	no
GenotypeToGenotypePartAssociation	Any association between one genotype and a genotypic entity that is a sub-com...	no
GenotypeToGeneAssociation	Any association between a genotype and a gene	no
GenotypeToVariantAssociation	Any association between a genotype and a sequence variant	no
GeneToGeneAssociation	abstract parent class for different kinds of gene-gene or gene product to gen...	no
GeneToGeneHomologyAssociation	A homology association between two genes	no
GeneToGeneFamilyAssociation	Set membership of a gene in a family of genes related by common evolutionary ...	no
GeneToGeneCoexpressionAssociation	Indicates that two genes are co-expressed, generally under the same condition...	no
PairwiseGeneToGeneInteraction	An interaction between two genes or two gene products	no
PairwiseMolecularInteraction	An interaction at the molecular level between two physical entities	no
CellLineToDiseaseOrPhenotypicFeatureAssociation	An relationship between a cell line and a disease or a phenotype, where the c...	no
ChemicalToChemicalAssociation	A relationship between two chemical entities	no
ReactionToParticipantAssociation		no
ReactionToCatalystAssociation		no
ChemicalToChemicalDerivationAssociation	A causal relationship between two chemical entities, where the subject repres...	no
ChemicalToDiseaseOrPhenotypicFeatureAssociation	An interaction between a chemical entity and a phenotype or disease, where th...	no
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation	This association defines a relationship between a chemical or treatment (or p...	no
ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation	This association defines a relationship between a chemical or treatment (or p...	no
GeneToPathwayAssociation	An interaction between a gene or gene product and a biological process or pat...	no
MolecularActivityToPathwayAssociation	Association that holds the relationship between a reaction and the pathway it...	no
ChemicalToPathwayAssociation	An interaction between a chemical entity and a biological process or pathway	no
NamedThingAssociatedWithLikelihoodOfNamedThingAssociation		no
ChemicalGeneInteractionAssociation	describes a physical interaction between a chemical entity and a gene or gene...	no
ChemicalAffectsGeneAssociation	Describes an effect that a chemical has on a gene or gene product (e	no
GeneAffectsChemicalAssociation	Describes an effect that a gene or gene product has on a chemical entity (e	no
DrugToGeneAssociation	An interaction between a drug and a gene or gene product	no
MaterialSampleDerivationAssociation	An association between a material sample and the material entity from which i...	no
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation	An association between a material sample and a disease or phenotype	no
DiseaseToExposureEventAssociation	An association between an exposure event and a disease	no
ExposureEventToOutcomeAssociation	An association between an exposure event and an outcome	no
InformationContentEntityToNamedThingAssociation	association between a named thing and a information content entity where the ...	no
DiseaseOrPhenotypicFeatureToLocationAssociation	An association between either a disease or a phenotypic feature and an anatom...	no
DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation	An association between either a disease or a phenotypic feature and its mode ...	no
GenotypeToPhenotypicFeatureAssociation	Any association between one genotype and a phenotypic feature, where having t...	no
ExposureEventToPhenotypicFeatureAssociation	Any association between an environment and a phenotypic feature, where being ...	no
DiseaseToPhenotypicFeatureAssociation	An association between a disease and a phenotypic feature in which the phenot...	no
CaseToPhenotypicFeatureAssociation	An association between a case (e	no
BehaviorToBehavioralFeatureAssociation	An association between an mixture behavior and a behavioral feature manifeste...	no
GeneToDiseaseOrPhenotypicFeatureAssociation		no
GeneToPhenotypicFeatureAssociation		no
GeneToDiseaseAssociation		no
CausalGeneToDiseaseAssociation		no
CorrelatedGeneToDiseaseAssociation		no
DruggableGeneToDiseaseAssociation		no
VariantToGeneAssociation	An association between a variant and a gene, where the variant has a genetic ...	no
VariantToGeneExpressionAssociation	An association between a variant and expression of a gene (i	no
VariantToPopulationAssociation	An association between a variant and a population, where the variant has part...	no
PopulationToPopulationAssociation	An association between a two populations	no
VariantToPhenotypicFeatureAssociation		no
VariantToDiseaseAssociation		no
GenotypeToDiseaseAssociation		no
GeneAsAModelOfDiseaseAssociation		no
VariantAsAModelOfDiseaseAssociation		no
GenotypeAsAModelOfDiseaseAssociation		no
CellLineAsAModelOfDiseaseAssociation		no
OrganismalEntityAsAModelOfDiseaseAssociation		no
OrganismToOrganismAssociation		no
TaxonToTaxonAssociation		no
GeneHasVariantThatContributesToDiseaseAssociation		no
GeneToExpressionSiteAssociation	An association between a gene and a gene expression site, possibly qualified ...	no
SequenceVariantModulatesTreatmentAssociation	An association between a sequence variant and a treatment or health intervent...	no
FunctionalAssociation	An association between a macromolecular machine mixin (gene, gene product or ...	no
MacromolecularMachineToMolecularActivityAssociation	A functional association between a macromolecular machine (gene, gene product...	no
MacromolecularMachineToBiologicalProcessAssociation	A functional association between a macromolecular machine (gene, gene product...	no
MacromolecularMachineToCellularComponentAssociation	A functional association between a macromolecular machine (gene, gene product...	no
MolecularActivityToChemicalEntityAssociation	Added in response to capturing relationship between microbiome activities as ...	no
MolecularActivityToMolecularActivityAssociation	Added in response to capturing relationship between microbiome activities as ...	no
GeneToGoTermAssociation		no
EntityToDiseaseAssociation		no
EntityToPhenotypicFeatureAssociation		no
SequenceAssociation	An association between a sequence feature and a nucleic acid entity it is loc...	no
GenomicSequenceLocalization	A relationship between a sequence feature and a nucleic acid entity it is loc...	no
SequenceFeatureRelationship	For example, a particular exon is part of a particular transcript or gene	no
TranscriptToGeneRelationship	A gene is a collection of transcripts	no
GeneToGeneProductRelationship	A gene is transcribed and potentially translated to a gene product	no
ExonToTranscriptRelationship	A transcript is formed from multiple exons	no
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation	A regulatory relationship between two genes	no
AnatomicalEntityToAnatomicalEntityAssociation		no
AnatomicalEntityToAnatomicalEntityPartOfAssociation	A relationship between two anatomical entities where the relationship is mere...	no
AnatomicalEntityToAnatomicalEntityOntogenicAssociation	A relationship between two anatomical entities where the relationship is onto...	no
OrganismTaxonToOrganismTaxonAssociation	A relationship between two organism taxon nodes	no
OrganismTaxonToOrganismTaxonSpecialization	A child-parent relationship between two taxa	no
OrganismTaxonToOrganismTaxonInteraction	An interaction relationship between two taxa	no
OrganismTaxonToEnvironmentAssociation		no

Properties

Range: String

Aliases

subject prefix

Examples

Value
NCBIGene

Identifier and Mapping Information

Annotations

property	value
denormalized	True

Schema Source

from schema: https://w3id.org/biolink/biolink-model

LinkML Source

name: subject namespace
annotations:
  denormalized:
    tag: denormalized
    value: true
description: Used to hold the subject namespace of an association. This is a denormalized  field
  used primarily in the SQL serialization of a knowledge graph via KGX.
examples:
- value: NCBIGene
  description: The subject namespace of the association between the gene 'BRCA1' and
    the disease 'breast cancer' is 'NCBIGene'.
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- subject prefix
is_a: association slot
domain: association
multivalued: false
alias: subject_namespace
domain_of:
- association
range: string