Slot: type
URI: rdf:type
Inheritance
- type
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| Entity | Root Biolink Model class for all things and informational relationships, real... | no |
| Attribute | A property or characteristic of an entity | no |
| ChemicalRole | A role played by the molecular entity or part thereof within a chemical cont... | no |
| BiologicalSex | no | |
| PhenotypicSex | An attribute corresponding to the phenotypic sex of the individual, based upo... | no |
| GenotypicSex | An attribute corresponding to the genotypic sex of the individual, based upon... | no |
| SeverityValue | describes the severity of a phenotypic feature or disease | no |
| NamedThing | a databased entity or concept/class | no |
| OrganismTaxon | A classification of a set of organisms | no |
| Event | Something that happens at a given place and time | no |
| AdministrativeEntity | no | |
| StudyResult | A collection of data items from a study that are about a particular study sub... | no |
| Study | a detailed investigation and/or analysis | no |
| StudyVariable | a variable that is used as a measure in the investigation of a study | no |
| CommonDataElement | A Common Data Element (CDE) is a standardized, precisely defined question, pa... | no |
| ConceptCountAnalysisResult | A result of a concept count analysis | no |
| ObservedExpectedFrequencyAnalysisResult | A result of a observed expected frequency analysis | no |
| RelativeFrequencyAnalysisResult | A result of a relative frequency analysis | no |
| TextMiningResult | A result of text mining | no |
| ChiSquaredAnalysisResult | A result of a chi squared analysis | no |
| LogOddsAnalysisResult | A result of a log odds ratio analysis | no |
| Agent | person, group, organization or project that provides a piece of information (... | no |
| InformationContentEntity | a piece of information that typically describes some topic of discourse or is... | no |
| Dataset | an item that refers to a collection of data from a data source | no |
| DatasetDistribution | an item that holds distribution level information about a dataset | no |
| DatasetVersion | an item that holds version level information about a dataset | no |
| DatasetSummary | an item that holds summary level information about a dataset | no |
| ConfidenceLevel | Level of confidence in a statement | no |
| EvidenceType | Class of evidence that supports an association | no |
| Publication | Any ‘published’ piece of information | no |
| Book | This class may rarely be instantiated except if use cases of a given knowledg... | yes |
| BookChapter | no | |
| Serial | This class may rarely be instantiated except if use cases of a given knowledg... | yes |
| Article | a piece of writing on a particular topic presented as a stand-alone section ... | no |
| JournalArticle | an article, typically presenting results of research, that is published in a... | no |
| Patent | a legal document granted by a patent issuing authority which confers upon th... | no |
| WebPage | a document that is published according to World Wide Web standards, which ma... | no |
| PreprintPublication | a document reresenting an early version of an author's original scholarly wor... | no |
| DrugLabel | a document accompanying a drug or its container that provides written, printe... | no |
| RetrievalSource | Provides information about how a particular InformationResource served as a s... | no |
| PhysicalEntity | An entity that has material reality (a | no |
| Activity | An activity is something that occurs over a period of time and acts upon or w... | no |
| Procedure | A series of actions conducted in a certain order or manner | no |
| Phenomenon | a fact or situation that is observed to exist or happen, especially one whose... | no |
| Device | A thing made or adapted for a particular purpose, especially a piece of mecha... | no |
| DiagnosticAid | A device or substance used to help diagnose disease or injury | no |
| StudyPopulation | A group of people banded together or treated as a group as participants in a ... | no |
| MaterialSample | A sample is a limited quantity of something (e | no |
| PlanetaryEntity | Any entity or process that exists at the level of the whole planet | no |
| EnvironmentalProcess | no | |
| EnvironmentalFeature | no | |
| GeographicLocation | a location that can be described in lat/long coordinates | no |
| GeographicLocationAtTime | a location that can be described in lat/long coordinates, for a particular ti... | no |
| BiologicalEntity | no | |
| MolecularEntity | A molecular entity is a chemical entity composed of individual or covalently ... | no |
| ChemicalEntity | A chemical entity is a physical entity that pertains to chemistry or biochemi... | no |
| SmallMolecule | A small molecule entity is a molecular entity characterized by availability i... | no |
| ChemicalMixture | A chemical mixture is a chemical entity composed of two or more molecular ent... | no |
| NucleicAcidEntity | A nucleic acid entity is a molecular entity characterized by availability in ... | no |
| RegulatoryRegion | A region (or regions) of the genome that contains known or putative regulator... | no |
| AccessibleDnaRegion | A region (or regions) of a chromatinized genome that has been measured to be ... | no |
| TranscriptionFactorBindingSite | A region (or regions) of the genome that contains a region of DNA known or pr... | no |
| MolecularMixture | A molecular mixture is a chemical mixture composed of two or more molecular e... | no |
| ComplexMolecularMixture | A complex molecular mixture is a chemical mixture composed of two or more mol... | no |
| BiologicalProcessOrActivity | Either an individual molecular activity, or a collection of causally connecte... | no |
| MolecularActivity | An execution of a molecular function carried out by a gene product or macromo... | no |
| BiologicalProcess | One or more causally connected executions of molecular functions | no |
| Pathway | no | |
| PhysiologicalProcess | no | |
| Behavior | no | |
| ProcessedMaterial | A chemical entity (often a mixture) processed for consumption for nutritional... | no |
| Drug | A substance intended for use in the diagnosis, cure, mitigation, treatment, o... | no |
| EnvironmentalFoodContaminant | no | |
| FoodAdditive | no | |
| Food | A substance consumed by a living organism as a source of nutrition | no |
| OrganismAttribute | describes a characteristic of an organismal entity | no |
| PhenotypicQuality | A property of a phenotype | no |
| GeneticInheritance | The pattern or 'mode' in which a particular genetic trait or disorder is pass... | no |
| OrganismalEntity | A named entity that is either a part of an organism, a whole organism, popula... | no |
| Bacterium | A member of a group of unicellular microorganisms lacking a nuclear membrane,... | no |
| Virus | A virus is a microorganism that replicates itself as a microRNA and infects t... | no |
| CellularOrganism | no | |
| Mammal | A member of the class Mammalia, a clade of endothermic amniotes distinguished... | no |
| Human | A member of the the species Homo sapiens | no |
| Plant | no | |
| Invertebrate | An animal lacking a vertebral column | no |
| Vertebrate | A sub-phylum of animals consisting of those having a bony or cartilaginous ve... | no |
| Fungus | A kingdom of eukaryotic, heterotrophic organisms that live as saprobes or par... | no |
| LifeStage | A stage of development or growth of an organism, including post-natal adult s... | no |
| IndividualOrganism | An instance of an organism | no |
| PopulationOfIndividualOrganisms | A collection of individuals from the same taxonomic class distinguished by on... | no |
| DiseaseOrPhenotypicFeature | Either one of a disease or an individual phenotypic feature | no |
| Disease | A disorder of structure or function, especially one that produces specific s... | no |
| PhenotypicFeature | A combination of entity and quality that makes up a phenotyping statement | no |
| BehavioralFeature | A phenotypic feature which is behavioral in nature | no |
| AnatomicalEntity | A subcellular location, cell type or gross anatomical part | no |
| CellularComponent | A location in or around a cell | no |
| Cell | no | |
| CellLine | no | |
| GrossAnatomicalStructure | no | |
| Gene | A region (or regions) that includes all of the sequence elements necessary to... | no |
| MacromolecularComplex | A stable assembly of two or more macromolecules, i | no |
| NucleosomeModification | A chemical modification of a histone protein within a nucleosome octomer or a... | no |
| Genome | A genome is the sum of genetic material within a cell or virion | no |
| Exon | A region of the transcript sequence within a gene which is not removed from t... | no |
| Transcript | An RNA synthesized on a DNA or RNA template by an RNA polymerase | no |
| CodingSequence | no | |
| Polypeptide | A polypeptide is a molecular entity characterized by availability in protein ... | no |
| Protein | A gene product that is composed of a chain of amino acid sequences and is pro... | no |
| ProteinIsoform | Represents a protein that is a specific isoform of the canonical or reference... | no |
| ProteinDomain | A conserved part of protein sequence and (tertiary) structure that can evolve... | no |
| PosttranslationalModification | A chemical modification of a polypeptide or protein that occurs after transla... | no |
| ProteinFamily | no | |
| NucleicAcidSequenceMotif | A linear nucleotide sequence pattern that is widespread and has, or is conjec... | no |
| RNAProduct | no | |
| RNAProductIsoform | Represents a protein that is a specific isoform of the canonical or reference... | no |
| NoncodingRNAProduct | no | |
| MicroRNA | no | |
| SiRNA | A small RNA molecule that is the product of a longer exogenous or endogenous ... | no |
| GeneFamily | any grouping of multiple genes or gene products related by common descent | no |
| Zygosity | no | |
| Genotype | An information content entity that describes a genome by specifying the total... | no |
| Haplotype | A set of zero or more Alleles on a single instance of a Sequence[VMC] | no |
| SequenceVariant | A sequence_variant is a non exact copy of a sequence_feature or genome exhibi... | no |
| Snv | SNVs are single nucleotide positions in genomic DNA at which different sequen... | no |
| ReagentTargetedGene | A gene altered in its expression level in the context of some experiment as a... | no |
| ClinicalAttribute | Attributes relating to a clinical manifestation | no |
| ClinicalMeasurement | A clinical measurement is a special kind of attribute which results from a la... | no |
| ClinicalModifier | Used to characterize and specify the phenotypic abnormalities defined in the ... | no |
| ClinicalCourse | The course a disease typically takes from its onset, progression in time, and... | no |
| Onset | The age group in which (disease) symptom manifestations appear | no |
| ClinicalEntity | Any entity or process that exists in the clinical domain and outside the biol... | no |
| ClinicalTrial | no | |
| ClinicalIntervention | no | |
| ClinicalFinding | this category is currently considered broad enough to tag clinical lab measur... | no |
| Hospitalization | no | |
| SocioeconomicAttribute | Attributes relating to a socioeconomic manifestation | no |
| Case | An individual (human) organism that has a patient role in some clinical conte... | no |
| Cohort | A group of people banded together or treated as a group who share common char... | no |
| GenomicBackgroundExposure | A genomic background exposure is where an individual's specific genomic backg... | no |
| PathologicalProcess | A biologic function or a process having an abnormal or deleterious effect at ... | no |
| PathologicalProcessExposure | A pathological process, when viewed as an exposure, representing a preconditi... | no |
| PathologicalAnatomicalStructure | An anatomical structure with the potential of have an abnormal or deleterious... | no |
| PathologicalAnatomicalExposure | An abnormal anatomical structure, when viewed as an exposure, representing an... | no |
| DiseaseOrPhenotypicFeatureExposure | A disease or phenotypic feature state, when viewed as an exposure, represents... | no |
| ChemicalExposure | A chemical exposure is an intake of a particular chemical entity | no |
| ComplexChemicalExposure | A complex chemical exposure is an intake of a chemical mixture (e | no |
| DrugExposure | A drug exposure is an intake of a particular drug | no |
| DrugToGeneInteractionExposure | drug to gene interaction exposure is a drug exposure is where the interaction... | no |
| Treatment | A treatment is targeted at a disease or phenotype and may involve multiple dr... | no |
| BioticExposure | An external biotic exposure is an intake of (sometimes pathological) biologic... | no |
| GeographicExposure | A geographic exposure is a factor relating to geographic proximity to some im... | no |
| EnvironmentalExposure | A environmental exposure is a factor relating to abiotic processes in the env... | no |
| BehavioralExposure | A behavioral exposure is a factor relating to behavior impacting an individua... | no |
| SocioeconomicExposure | A socioeconomic exposure is a factor relating to social and financial status ... | no |
| Association | A typed association between two entities, supported by evidence | yes |
| ChemicalEntityAssessesNamedThingAssociation | no | |
| ContributorAssociation | Any association between an entity (such as a publication) and various agents ... | no |
| GenotypeToGenotypePartAssociation | Any association between one genotype and a genotypic entity that is a sub-com... | no |
| GenotypeToGeneAssociation | Any association between a genotype and a gene | no |
| GenotypeToVariantAssociation | Any association between a genotype and a sequence variant | no |
| GeneToGeneAssociation | abstract parent class for different kinds of gene-gene or gene product to gen... | no |
| GeneToGeneHomologyAssociation | A homology association between two genes | no |
| GeneToGeneFamilyAssociation | Set membership of a gene in a family of genes related by common evolutionary ... | no |
| GeneToGeneCoexpressionAssociation | Indicates that two genes are co-expressed, generally under the same condition... | no |
| PairwiseGeneToGeneInteraction | An interaction between two genes or two gene products | no |
| PairwiseMolecularInteraction | An interaction at the molecular level between two physical entities | no |
| CellLineToDiseaseOrPhenotypicFeatureAssociation | An relationship between a cell line and a disease or a phenotype, where the c... | no |
| ChemicalToChemicalAssociation | A relationship between two chemical entities | no |
| ReactionToParticipantAssociation | no | |
| ReactionToCatalystAssociation | no | |
| ChemicalToChemicalDerivationAssociation | A causal relationship between two chemical entities, where the subject repres... | no |
| ChemicalToDiseaseOrPhenotypicFeatureAssociation | An interaction between a chemical entity and a phenotype or disease, where th... | no |
| ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation | This association defines a relationship between a chemical or treatment (or p... | no |
| ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation | This association defines a relationship between a chemical or treatment (or p... | no |
| GeneToPathwayAssociation | An interaction between a gene or gene product and a biological process or pat... | no |
| MolecularActivityToPathwayAssociation | Association that holds the relationship between a reaction and the pathway it... | no |
| ChemicalToPathwayAssociation | An interaction between a chemical entity and a biological process or pathway | no |
| NamedThingAssociatedWithLikelihoodOfNamedThingAssociation | no | |
| ChemicalGeneInteractionAssociation | describes a physical interaction between a chemical entity and a gene or gene... | no |
| ChemicalAffectsGeneAssociation | Describes an effect that a chemical has on a gene or gene product (e | no |
| GeneAffectsChemicalAssociation | Describes an effect that a gene or gene product has on a chemical entity (e | no |
| DrugToGeneAssociation | An interaction between a drug and a gene or gene product | no |
| MaterialSampleDerivationAssociation | An association between a material sample and the material entity from which i... | no |
| MaterialSampleToDiseaseOrPhenotypicFeatureAssociation | An association between a material sample and a disease or phenotype | no |
| DiseaseToExposureEventAssociation | An association between an exposure event and a disease | no |
| ExposureEventToOutcomeAssociation | An association between an exposure event and an outcome | no |
| InformationContentEntityToNamedThingAssociation | association between a named thing and a information content entity where the ... | no |
| DiseaseOrPhenotypicFeatureToLocationAssociation | An association between either a disease or a phenotypic feature and an anatom... | no |
| DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation | An association between either a disease or a phenotypic feature and its mode ... | no |
| GenotypeToPhenotypicFeatureAssociation | Any association between one genotype and a phenotypic feature, where having t... | no |
| ExposureEventToPhenotypicFeatureAssociation | Any association between an environment and a phenotypic feature, where being ... | no |
| DiseaseToPhenotypicFeatureAssociation | An association between a disease and a phenotypic feature in which the phenot... | no |
| CaseToPhenotypicFeatureAssociation | An association between a case (e | no |
| BehaviorToBehavioralFeatureAssociation | An association between an mixture behavior and a behavioral feature manifeste... | no |
| GeneToDiseaseOrPhenotypicFeatureAssociation | no | |
| GeneToPhenotypicFeatureAssociation | no | |
| GeneToDiseaseAssociation | no | |
| CausalGeneToDiseaseAssociation | no | |
| CorrelatedGeneToDiseaseAssociation | no | |
| DruggableGeneToDiseaseAssociation | no | |
| VariantToGeneAssociation | An association between a variant and a gene, where the variant has a genetic ... | no |
| VariantToGeneExpressionAssociation | An association between a variant and expression of a gene (i | no |
| VariantToPopulationAssociation | An association between a variant and a population, where the variant has part... | no |
| PopulationToPopulationAssociation | An association between a two populations | no |
| VariantToPhenotypicFeatureAssociation | no | |
| VariantToDiseaseAssociation | no | |
| GenotypeToDiseaseAssociation | no | |
| GeneAsAModelOfDiseaseAssociation | no | |
| VariantAsAModelOfDiseaseAssociation | no | |
| GenotypeAsAModelOfDiseaseAssociation | no | |
| CellLineAsAModelOfDiseaseAssociation | no | |
| OrganismalEntityAsAModelOfDiseaseAssociation | no | |
| OrganismToOrganismAssociation | no | |
| TaxonToTaxonAssociation | no | |
| GeneHasVariantThatContributesToDiseaseAssociation | no | |
| GeneToExpressionSiteAssociation | An association between a gene and a gene expression site, possibly qualified ... | no |
| SequenceVariantModulatesTreatmentAssociation | An association between a sequence variant and a treatment or health intervent... | no |
| FunctionalAssociation | An association between a macromolecular machine mixin (gene, gene product or ... | no |
| MacromolecularMachineToMolecularActivityAssociation | A functional association between a macromolecular machine (gene, gene product... | no |
| MacromolecularMachineToBiologicalProcessAssociation | A functional association between a macromolecular machine (gene, gene product... | no |
| MacromolecularMachineToCellularComponentAssociation | A functional association between a macromolecular machine (gene, gene product... | no |
| MolecularActivityToChemicalEntityAssociation | Added in response to capturing relationship between microbiome activities as ... | no |
| MolecularActivityToMolecularActivityAssociation | Added in response to capturing relationship between microbiome activities as ... | no |
| GeneToGoTermAssociation | no | |
| EntityToDiseaseAssociation | no | |
| EntityToPhenotypicFeatureAssociation | no | |
| SequenceAssociation | An association between a sequence feature and a nucleic acid entity it is loc... | no |
| GenomicSequenceLocalization | A relationship between a sequence feature and a nucleic acid entity it is loc... | no |
| SequenceFeatureRelationship | For example, a particular exon is part of a particular transcript or gene | no |
| TranscriptToGeneRelationship | A gene is a collection of transcripts | no |
| GeneToGeneProductRelationship | A gene is transcribed and potentially translated to a gene product | no |
| ExonToTranscriptRelationship | A transcript is formed from multiple exons | no |
| ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation | A regulatory relationship between two genes | no |
| AnatomicalEntityToAnatomicalEntityAssociation | no | |
| AnatomicalEntityToAnatomicalEntityPartOfAssociation | A relationship between two anatomical entities where the relationship is mere... | no |
| AnatomicalEntityToAnatomicalEntityOntogenicAssociation | A relationship between two anatomical entities where the relationship is onto... | no |
| OrganismTaxonToOrganismTaxonAssociation | A relationship between two organism taxon nodes | no |
| OrganismTaxonToOrganismTaxonSpecialization | A child-parent relationship between two taxa | no |
| OrganismTaxonToOrganismTaxonInteraction | An interaction relationship between two taxa | no |
| OrganismTaxonToEnvironmentAssociation | no |
Properties
-
Range: String
-
Multivalued: True
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
LinkML Source
name: type
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- AGRKB:soTermId
- gff3:type
- gpi:DB_Object_Type
domain: entity
slot_uri: rdf:type
multivalued: true
alias: type
domain_of:
- entity
range: string