Subset: TranslatorMinimal
Minimum subset of translator work
URI: TranslatorMinimal
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Classes in subset
| Class | Description |
|---|---|
| ChemicalEntity | A chemical entity is a physical entity that pertains to chemistry or biochemi... |
| ChemicalMixture | A chemical mixture is a chemical entity composed of two or more molecular ent... |
| ComplexMolecularMixture | A complex molecular mixture is a chemical mixture composed of two or more mol... |
| Disease | A disorder of structure or function, especially one that produces specific s... |
| EpigenomicEntity | |
| Gene | A region (or regions) that includes all of the sequence elements necessary to... |
| GenomicEntity | |
| MolecularEntity | A molecular entity is a chemical entity composed of individual or covalently ... |
| MolecularMixture | A molecular mixture is a chemical mixture composed of two or more molecular e... |
| NucleicAcidEntity | A nucleic acid entity is a molecular entity characterized by availability in ... |
| SmallMolecule | A small molecule entity is a molecular entity characterized by availability i... |
ChemicalEntity
A chemical entity is a physical entity that pertains to chemistry or biochemistry.
ChemicalMixture
A chemical mixture is a chemical entity composed of two or more molecular entities.
ComplexMolecularMixture
A complex molecular mixture is a chemical mixture composed of two or more molecular entities with unknown concentration and stoichiometry.
Disease
A disorder of structure or function, especially one that produces specific signs, phenotypes or symptoms or that affects a specific location and is not simply a direct result of physical injury. A disposition to undergo pathological processes that exists in an organism because of one or more disorders in that organism.
EpigenomicEntity
None
Gene
A region (or regions) that includes all of the sequence elements necessary to encode a functional transcript. A gene locus may include regulatory regions, transcribed regions and/or other functional sequence regions.
GenomicEntity
None
MolecularEntity
A molecular entity is a chemical entity composed of individual or covalently bonded atoms.
MolecularMixture
A molecular mixture is a chemical mixture composed of two or more molecular entities with known concentration and stoichiometry.
NucleicAcidEntity
A nucleic acid entity is a molecular entity characterized by availability in gene databases of nucleotide-based sequence representations of its precise sequence; for convenience of representation, partial sequences of various kinds are included.
SmallMolecule
A small molecule entity is a molecular entity characterized by availability in small-molecule databases of SMILES, InChI, IUPAC, or other unambiguous representation of its precise chemical structure; for convenience of representation, any valid chemical representation is included, even if it is not strictly molecular (e.g., sodium ion).
Slots in subset
| Slot | Description |
|---|---|
| actively_involved_in | holds between a continuant and a process or function, where the continuant ac... |
| actively_involves | |
| affects | Describes an entity that has an effect on the state or quality of another exi... |
| affects_likelihood_of | Holds between two entities where the presence or application of one alters th... |
| affects_response_to | |
| anatomical_context_qualifier | A statement qualifier representing an anatomical location where an relationsh... |
| aspect_qualifier | Composes with the core concept to describe new concepts of a different ontolo... |
| beneficial_in_models_for | Holds between an substance, procedure, or activity and a medical condition, ... |
| biomarker_for | holds between a measurable chemical entity and a disease or phenotypic featur... |
| broad_match | a list of terms from different schemas or terminology systems that have a bro... |
| capable_of | holds between a physical entity and process or function, where the continuant... |
| category | Name of the high level ontology class in which this entity is categorized |
| causal_mechanism_qualifier | A statement qualifier representing a type of molecular control mechanism thro... |
| caused_by | holds between two entities where the occurrence, existence, or activity of on... |
| causes | holds between two entities where the occurrence, existence, or activity of on... |
| chemically_similar_to | holds between one small molecule entity and another that it approximates for ... |
| close_match | a list of terms from different schemas or terminology systems that have a sem... |
| coexists_with | holds between two entities that are co-located in the same aggregate object, ... |
| colocalizes_with | holds between two entities that are observed to be located in the same place |
| composed_primarily_of | x composed_primarily_of_y if:more than half of the mass of x is made from par... |
| condition_associated_with_gene | holds between a gene and a disease or phenotypic feature that may be influenc... |
| condition_exacerbated_by | |
| condition_predisposed_by | |
| context_qualifier | Restricts the setting/context/location where the core concept (or qualified c... |
| contributes_to | holds between two entities where the occurrence, existence, or activity of on... |
| contribution_from | |
| correlated_with | A relationship that holds between two concepts represented by variables for w... |
| decreases_response_to | holds between two chemical entities where the action or effect of one decreas... |
| derivative_qualifier | A qualifier that composes with a core subject/object concept to describe som... |
| derives_from | holds between two distinct material entities, the new entity and the old enti... |
| derives_into | holds between two distinct material entities, the old entity and the new enti... |
| description | a human-readable description of an entity |
| direction_qualifier | Composes with the core concept (+ aspect if provided) to describe a change in... |
| disrupts | describes a relationship where one entity degrades or interferes with the str... |
| enabled_by | holds between a process and a physical entity, where the physical entity exec... |
| enables | holds between a physical entity and a process, where the physical entity exec... |
| exact_match | holds between two entities that have strictly equivalent meanings, with a hig... |
| expressed_in | holds between a gene or gene product and an anatomical entity in which it is ... |
| expresses | holds between an anatomical entity and gene or gene product that is expressed... |
| food_component_of | holds between a one or more chemical entities present in food, irrespective o... |
| form_or_variant_qualifier | A qualifier that composes with a core subject/object concept to define a spec... |
| frequency_qualifier | a qualifier used in a phenotypic association to state how frequent the phenot... |
| gene_associated_with_condition | holds between a gene and a disease or phenotypic feature that the gene or its... |
| gene_product_of | definition x has gene product of y if and only if y is a gene (SO:0000704) th... |
| gene_fusion_with | holds between two independent genes that have fused through translocation, i... |
| genetic_neighborhood_of | holds between two genes located nearby one another on a chromosome |
| genetically_associated_with | |
| genetically_interacts_with | holds between two genes whose phenotypic effects are dependent on each other ... |
| has_active_ingredient | holds between a drug and a molecular entity in which the latter is a part of ... |
| has_biomarker | holds between a disease or phenotypic feature and a measurable chemical entit... |
| has_excipient | holds between a drug and a molecular entities in which the latter is a part o... |
| has_food_component | holds between food and one or more chemical entities composing it, irrespecti... |
| has_gene_product | holds between a gene and a transcribed and/or translated product generated fr... |
| has_input | holds between a process and a continuant, where the continuant is an input in... |
| has_member | Defines a mereological relation between a collection and an item |
| has_metabolite | holds between two molecular entities in which the second one is derived from ... |
| has_mode_of_inheritance | Relates a disease or phenotypic feature to its observed genetic segregation a... |
| has_nutrient | one or more nutrients which are growth factors for a living organism |
| has_output | holds between a process and a continuant, where the continuant is an output o... |
| has_part | holds between wholes and their parts (material entities or processes) |
| has_participant | holds between a process and a continuant, where the continuant is somehow inv... |
| has_phenotype | holds between a biological entity and a phenotype, where a phenotype is const... |
| has_plasma_membrane_part | Holds between a cell c and a protein complex or protein p if and only if that... |
| homologous_to | holds between two biological entities that have common evolutionary origin |
| id | A unique identifier for an entity |
| in_cell_population_with | holds between two genes or gene products that are expressed in the same cell ... |
| in_clinical_trials_for | Holds between an intervention and a medical condition, and reports that a cli... |
| in_complex_with | holds between two genes or gene products that are part of (or code for produc... |
| in_pathway_with | holds between two genes or gene products that are part of in the same biologi... |
| in_preclinical_trials_for | Holds between an substance, procedure, or activity and a medical condition, ... |
| in_taxon | connects an entity to its taxonomic classification |
| in_taxon_label | The human readable scientific name for the taxon of the entity |
| increases_response_to | holds between two chemical entities where the action or effect of one increas... |
| interacts_with | holds between any two entities that directly or indirectly interact with each... |
| iri | An IRI for an entity |
| is_active_ingredient_of | holds between a molecular entity and a drug, in which the former is a part of... |
| is_excipient_of | holds between a molecular entity and a drug in which the former is a part of ... |
| is_input_of | |
| is_metabolite_of | holds between two molecular entities in which the first one is derived from t... |
| is_output_of | |
| located_in | holds between a material entity and a material entity or site within which it... |
| location_of | holds between material entity or site and a material entity that is located w... |
| manifestation_of | that part of a phenomenon which is directly observable or visibly expressed, ... |
| member_of | Defines a mereological relation between a item and a collection |
| model_of | holds between a thing and some other thing it approximates for purposes of sc... |
| name | A human-readable name for an attribute or entity |
| narrow_match | a list of terms from different schemas or terminology systems that have a nar... |
| negatively_correlated_with | A relationship that holds between two concepts represented by variables for w... |
| nutrient_of | holds between a one or more chemical entities present in food, irrespective o... |
| object_aspect_qualifier | |
| object_context_qualifier | |
| object_derivative_qualifier | |
| object_direction_qualifier | |
| object_form_or_variant_qualifier | |
| object_part_qualifier | |
| occurs_in | holds between a process and a material entity or site within which the proces... |
| occurs_together_in_literature_with | holds between two entities where their co-occurrence is correlated by counts ... |
| onset_qualifier | a qualifier used in a phenotypic association to state when the phenotype appe... |
| orthologous_to | a homology relationship between entities (typically genes) that diverged afte... |
| overlaps | holds between entities that overlap in their extents (materials or processes) |
| paralogous_to | a homology relationship that holds between entities (typically genes) that di... |
| part_of | holds between parts and wholes (material entities or processes) |
| part_qualifier | defines a specific part/component of the core concept (used in cases there th... |
| participates_in | holds between a continuant and a process, where the continuant is somehow inv... |
| physically_interacts_with | holds between two entities that make physical contact as part of some interac... |
| positively_correlated_with | A relationship that holds between two concepts represented by variables for w... |
| preceded_by | holds between two processes, where the other is completed before the one begi... |
| precedes | holds between two processes, where one completes before the other begins |
| predisposes_to_condition | Holds between two entities where the presence or application of one increases... |
| preventative_for_condition | Holds between a substance, procedure, or activity and a medical condition (di... |
| produces | holds between a material entity and a product that is generated through the i... |
| promotes_condition | Holds between a substance, procedure, or activity and a medical condition (di... |
| qualifier | grouping slot for all qualifiers on an edge |
| resource_id | The CURIE for an Information Resource that served as a source of knowledge ex... |
| resource_role | The role played by the InformationResource in serving as a source for an Edge |
| response_affected_by | holds between two chemical entities where the susceptibility of a biological ... |
| response_decreased_by | |
| response_increased_by | |
| retrieval_source_ids | A list of retrieval sources that served as a source of knowledge expressed in... |
| same_as | holds between two entities that are considered equivalent to each other |
| semmed_agreement_count | The number of times this concept has been asserted in the SemMedDB literature... |
| severity_qualifier | a qualifier used in a phenotypic association to state how severe the phenotyp... |
| sex_qualifier | a qualifier used in a phenotypic association to state whether the association... |
| similar_to | holds between an entity and some other entity with similar features |
| species_context_qualifier | A statement qualifier representing a taxonomic category of species in which a... |
| stage_qualifier | stage during which gene or protein expression of takes place |
| statement_qualifier | |
| subclass_of | holds between two classes where the domain class is a specialization of the r... |
| subject_aspect_qualifier | |
| subject_context_qualifier | |
| subject_derivative_qualifier | |
| subject_direction_qualifier | |
| subject_form_or_variant_qualifier | |
| subject_part_qualifier | |
| superclass_of | holds between two classes where the domain class is a super class of the rang... |
| support_graphs | A list of knowledge graphs that support the existence of this node |
| synonym | Alternate human-readable names for a thing |
| treated_by | |
| treats | Holds between a substance, procedure, or activity and a medical condition (di... |
| treats_or_taken_or_studied_to_treat | Holds between an substance, procedure, or activity and a medical condition (d... |
| was_applied_to_treat | Holds between an substance, procedure, or activity and a medical condition, ... |
| xenologous_to | a homology relationship characterized by an interspecies (horizontal) transfe... |
| xref | A database cross reference or alternative identifier for a NamedThing or edge... |
Enumerations in subset
| Enumeration | Description |
|---|---|
| ResourceRoleEnum | The role played by the information reource in serving as a source for an edge... |